CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10003866m.g
(
Capsella rubella
)
mTERF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02536 (mTERF)
IPR003690
Carubv10003866m.g
T264642_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10003866m
mTERF
143
308
FLESSGLNPTEYTHLIPSDKDFLDEEGFLLENHHVLCYSGVDPKKIGKIFIKAREVFGYETGVLASKIKAYEDLGMSRYFLAKLIVCSPGILVGNMNLELGKVLKTLKSLGFDFDWVMENLSEEASCDWSSVYRVLSLLRDICFDEKELCGLIRKCPRLIFENSGR
Carubv10003866m
mTERF
278
455
LSLLRDICFDEKELCGLIRKCPRLIFENSGRWTVVLAGFETKHGSSRSELCSLFQKFQQIQVEECVSNLRHCFLFLKEIEMEDDEIHKVFRSHSWWLGSCRLKKTSSLLLYLKAGKARLCQVIQENPEEMKKWTMGSKVQPLPATEEKLESKSMKAQFLLYLGYKENSQEMEKALERF
Carubv10003866m
mTERF
448
563
MEKALERFCGKGSELRERFNVLVSLGFKEKDVKEMVKVSPKILTQASDVLESKVNYLVKELGYPLSTLVDFPSCLKFTLQRMKLRFAMFSWLQARGKVGPKIKISTMLACSDKIFV
Carubv10003866m
mTERF
672
816
EDEIVRSITRFLLFHPVNEFEPFLESLGLKPSEFSHLVPCDKMFLNEDAFLLENYHVFWNYGIGREKMGKIFSEARQVFGYETGVLASKIKAYEDLGFSRLFLSKLIVCSPTILIGSMNVRLAKVMEMLKSIGFGVDWVTENLSE
Carubv10003866m
mTERF
829
1013
LSLLRDICVDGNELRELIRMRPRLIFEDSGEWTLILAAFETKLGSSRSELSSLFQKLPQSQSLGKCLMNLRHCFLFLKDIEMEADEISKIFRLHSSWLGRTRLKQTSTLLINLKGGKRRLCQAIQENPEEMKKWIMGLRVQPLPATRCKVDSKSKTMKTQFLLDLGYEENSEEMERALKNFRGKG
Carubv10003866m
mTERF
977
1117
KVDSKSKTMKTQFLLDLGYEENSEEMERALKNFRGKGSELHERFNVLVSLGFTEEVVKDMVKACPSILSQASDILESKVNYLIDELGYPLSTLITFPTCLKYTLQRMKLRFAMFSWLQARGKADPKLAVSTILVCSDKFFA
Links
Other
mTERF
family TFs
Other
Capsella rubella
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.8005s0017
Capsella grandiflora
Cagra.8005s0017
N
0.815
Bostr.13129s0291
Boechera stricta
Bostr.13129s0291
N
0.792