CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10026279m.g
(
Capsella rubella
)
mTERF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02536 (mTERF)
IPR003690
Carubv10026279m.g
T264672_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10026279m
mTERF
80
331
FSLFRDIGFSEEETEMILAKNPDIKSAPLDTIGARVASLQSLKINGFALQGLIAKSPNLLTSEEFDVVNSFLVDELEGRLEPELLERLLAVADTSILLSFNQKVRLLILHGIPKEKISHVLNKVYLNKLLYQKSVEDIERLISFLEPFGGIGIIARRPVILNSDLDSQLIPRVNFIRDLSGEDDFATGTVLRRLPAILSYSVEHMNSHVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFLKEC
Carubv10026279m
mTERF
183
487
VRLLILHGIPKEKISHVLNKVYLNKLLYQKSVEDIERLISFLEPFGGIGIIARRPVILNSDLDSQLIPRVNFIRDLSGEDDFATGTVLRRLPAILSYSVEHMNSHVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFLKECGFDSAGMFKFLSKAPLYLALSEDNLSHKLGFLVKIGYRHRTKELAFAMGAVTRTSSDNMQRVIGLYLSYGLSLEDILAMSTKHPQVLQYNYSSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKHRYEEKLKSRGENMSLNKLLTVSAERFS
Carubv10026346m
mTERF
62
151
RCSCLSSPIDAGSQIESLFSLFRDIGFSEEETEMILAKNPDIKSAPLDTIGARVASLQSLKINGFALQGLIAKSPNLLTSEEFDVVNSFL
Carubv10026346m
mTERF
151
301
LVDELEGRLEPELLERLLAVADTSILLSFNQKKSVEDIERLISFLEPFGGIGIIARRPVILNSDLDSQLIPRVNFIRDLSGEDDFATGTVLRRLPAILSYSVEHMNSHVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFLKE
Carubv10026346m
mTERF
286
458
TSKERKLRPRIEFLKECGFDSAGMFKFLSKAPLYLALSEDNLSHKLGFLVKIGYRHRTKELAFAMGAVTRTSSDNMQRVIGLYLSYGLSLEDILAMSTKHPQVLQYNYSSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKHRYEEKLKSRGENMSLNKLLTVSAERFS
Links
Other
mTERF
family TFs
Other
Capsella rubella
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.14571s0002
Capsella grandiflora
Cagra.14571s0002
N
0.978
MTERF8
Arabidopsis thaliana
AT5G54180
N
0.920
Bostr.26833s0853
Boechera stricta
Bostr.26833s0853
N
0.706