Bo1g138940 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo1g138940 T267104_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB10
M07081_2.00 		Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB10_col_a 		0.787 0.870
AtMYB10
M07082_2.00 		Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB10_colamp_a 		0.787 0.870
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.722 0.761
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.722 0.761
MYB15
M07084_2.00 		Arabidopsis thaliana
NNNHNNHHNHHYCACCWAMYH
DRKTWGGTGRDDNDDNNDNNN		 Dap-seq
OMalley et al.(2016)
ATY19_col_a 		0.697 0.739
MYB15
M02699_2.00 		Arabidopsis thaliana
CCACCTACCSBBG
CVVSGGTAGGTGG		 SELEX
Mathelier et al.(2014)
MA0574.1 		0.697 0.739
MYB15
M11041_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_01 		0.697 0.739
MYB15
M11042_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_Q2 		0.697 0.739
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.682 0.717
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.682 0.717
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g138940.1 Myb 17 64
Bo1g138940.1 Myb 70 114

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra039344 Brassica rapa Bra039344 I 0.872
AtMYB10 Arabidopsis lyrata fgenesh2_kg.3__1346__AT3G12820.1 I 0.826
Bostr.3640s0057 Boechera stricta Bostr.3640s0057 I 0.799
Cagra.5641s0047 Capsella grandiflora Cagra.5641s0047 I 0.796
Carubv10016289m.g Capsella rubella Carubv10016289m.g I 0.796
Bo3g065150 Brassica oleracea Bo3g065150 I 0.795
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.787
Thhalv10021926m.g Eutrema salsugineum Thhalv10021926m.g I 0.786
POPTR_0005s09930 Populus trichocarpa POPTR_0005s09930 I 0.785
Bra001472 Brassica rapa Bra001472 I 0.782
30169.m006322 Ricinus communis 30169.m006322 I 0.779
Gorai.002G106300 Gossypium raimondii Gorai.002G106300 I 0.779
Cagra.0998s0005 Capsella grandiflora Cagra.0998s0005 I 0.774
Carubv10003283m.g Capsella rubella Carubv10003283m.g I 0.774
POPTR_0007s08190 Populus trichocarpa POPTR_0007s08190 I 0.772
SapurV1A.0085s0540 Salix purpurea SapurV1A.0085s0540 I 0.770
VIT_19s0085g00050 Vitis vinifera VIT_19s0085g00050 I 0.760
SapurV1A.0284s0110 Salix purpurea SapurV1A.0284s0110 I 0.757
Bo3g185830 Brassica oleracea Bo3g185830 I 0.749
Bra030812 Brassica rapa Bra030812 I 0.749
ATMYB72 Arabidopsis lyrata fgenesh2_kg.1__4638__AT1G56160.1 I 0.749
Bostr.6758s0073 Boechera stricta Bostr.6758s0073 I 0.749
Thhalv10012163m.g Eutrema salsugineum Thhalv10012163m.g I 0.749
ATMYB72 Arabidopsis thaliana AT1G56160 I 0.744
TCM_032927 Theobroma cacao TCM_032927 I 0.742
Gorai.004G269400 Gossypium raimondii Gorai.004G269400 I 0.742
MTR_2g067420 Medicago truncatula MTR_2g067420 I 0.739
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I 0.729
Bo3g081700 Brassica oleracea Bo3g081700 I 0.727
Bo7g040780 Brassica oleracea Bo7g040780 I 0.727
Bra001907 Brassica rapa Bra001907 I 0.727
Bra014929 Brassica rapa Bra014929 I 0.727
MYB15 Arabidopsis lyrata fgenesh2_kg.3__2539__AT3G23250.1 I 0.727
Bostr.19424s0318 Boechera stricta Bostr.19424s0318 I 0.727
Cagra.2181s0015 Capsella grandiflora Cagra.2181s0015 I 0.727
Thhalv10022110m.g Eutrema salsugineum Thhalv10022110m.g I 0.727
Ciclev10005102m.g Citrus clementina Ciclev10005102m.g I 0.726
orange1.1g045411m.g Citrus sinensis orange1.1g045411m.g I 0.726
GLYMA15G41255 Glycine max GLYMA15G41255 I 0.724
PGSC0003DMG400011243 Solanum tuberosum PGSC0003DMG400011243 I 0.724
Solyc10g005550.1 Solanum lycopersicum Solyc10g005550.1 I 0.724
Cucsa.118450 Cucumis sativus Cucsa.118450 I 0.724
MYB58 Arabidopsis thaliana AT1G16490 D 0.722
gene29961-v1.0-hybrid Fragaria vesca gene29961-v1.0-hybrid I 0.721
PK20358.1 Cannabis sativa PK20358.1 I 0.720
Cagra.1361s0065 Capsella grandiflora Cagra.1361s0065 I 0.717
PGSC0003DMG400038913 Solanum tuberosum PGSC0003DMG400038913 I 0.716
Bo8g105490 Brassica oleracea Bo8g105490 I 0.713
Bra026720 Brassica rapa Bra026720 I 0.713
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.713
Ca_12130 Cicer arietinum Ca_12130 I 0.713
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.713
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.713
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.713
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.712
GSMUA_Achr5G03520_001 Musa acuminata GSMUA_Achr5G03520_001 I 0.712
Ciclev10005629m.g Citrus clementina Ciclev10005629m.g I 0.711
orange1.1g024484m.g Citrus sinensis orange1.1g024484m.g I 0.711
Carubv10015750m.g Capsella rubella Carubv10015750m.g I 0.710
GSMUA_Achr11G17870_001 Musa acuminata GSMUA_Achr11G17870_001 I 0.709
ATMYB63 Arabidopsis thaliana AT1G79180 D 0.708
ATMYB63 Arabidopsis lyrata fgenesh2_kg.2__2216__AT1G79180.1 I 0.708
Bostr.20129s0353 Boechera stricta Bostr.20129s0353 I 0.708
Carubv10020691m.g Capsella rubella Carubv10020691m.g I 0.708
Bo6g081140 Brassica oleracea Bo6g081140 I 0.705
Bra003619 Brassica rapa Bra003619 I 0.705
PRUPE_ppa026315mg Prunus persica PRUPE_ppa026315mg I 0.704
Pm011057 Prunus mume Pm011057 I 0.704
Cla021845 Citrullus lanatus Cla021845 I 0.703
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I 0.703
POPTR_0008s16660 Populus trichocarpa POPTR_0008s16660 I 0.702
GLYMA08G17861 Glycine max GLYMA08G17861 I 0.700
Cla013669 Citrullus lanatus Cla013669 I 0.700
MDP0000133542 Malus domestica MDP0000133542 I 0.700
MDP0000215675 Malus domestica MDP0000215675 I 0.699
MTR_1g076150 Medicago truncatula MTR_1g076150 I 0.698
MYB15 Arabidopsis thaliana AT3G23250 D 0.697
BGIOSGA005798 Oryza indica BGIOSGA005798 I 0.697
OBART02G28790 Oryza barthii OBART02G28790 I 0.697
OGLUM02G29380 Oryza glumaepatula OGLUM02G29380 I 0.697
OLONG_022853 Oryza longistaminata OLONG_022853 I 0.697
OMERI02G27850 Oryza meridionalis OMERI02G27850 I 0.697
ONIVA02G31530 Oryza nivara ONIVA02G31530 I 0.697
ORUFI02G30350 Oryza rufipogon ORUFI02G30350 I 0.697
OS02G0695200 Oryza sativa OS02G0695200 I 0.697
Aquca_030_00385 Aquilegia coerulea Aquca_030_00385 I 0.697
MTR_7g096930 Medicago truncatula MTR_7g096930 I 0.695
PGSC0003DMG400013405 Solanum tuberosum PGSC0003DMG400013405 I 0.694
PGSC0003DMG400016292 Solanum tuberosum PGSC0003DMG400016292 I 0.694
Solyc06g053610.2 Solanum lycopersicum Solyc06g053610.2 I 0.694
cassava35427.valid.m1 Manihot esculenta cassava35427.valid.m1 I 0.694
Gorai.011G173900 Gossypium raimondii Gorai.011G173900 I 0.694
GLYMA03G31980 Glycine max GLYMA03G31980 I 0.693
GLYMA19G34740 Glycine max GLYMA19G34740 I 0.693
PGSC0003DMG400020071 Solanum tuberosum PGSC0003DMG400020071 I 0.693
PGSC0003DMG400023405 Solanum tuberosum PGSC0003DMG400023405 I 0.693
Solyc05g055030.1 Solanum lycopersicum Solyc05g055030.1 I 0.693
Solyc06g083900.2 Solanum lycopersicum Solyc06g083900.2 I 0.693
Lus10031758.g Linum usitatissimum Lus10031758.g I 0.692
PRUPE_ppa020190mg Prunus persica PRUPE_ppa020190mg I 0.691
Pm009364 Prunus mume Pm009364 I 0.691
Lus10022021.g Linum usitatissimum Lus10022021.g I 0.691
MDP0000230141 Malus domestica MDP0000230141 I 0.691
MDP0000435315 Malus domestica MDP0000435315 I 0.691
GLYMA10G32410 Glycine max GLYMA10G32410 I 0.690
GLYMA20G35180 Glycine max GLYMA20G35180 I 0.690
Ciclev10022057m.g Citrus clementina Ciclev10022057m.g I 0.690
MLOC_53640 Hordeum vulgare MLOC_53640 I 0.689
Bostr.7128s0256 Boechera stricta Bostr.7128s0256 I 0.689
GSMUA_Achr4G18180_001 Musa acuminata GSMUA_Achr4G18180_001 I 0.688
LPERR02G23410 Leersia perrieri LPERR02G23410 I 0.688
OB02G35920 Oryza brachyantha OB02G35920 I 0.688
OPUNC02G26430 Oryza punctata OPUNC02G26430 I 0.688
PK08038.1 Cannabis sativa PK08038.1 I 0.688
Cla007705 Citrullus lanatus Cla007705 I 0.687
Cucsa.383620 Cucumis sativus Cucsa.383620 I 0.687
Cucsa.388490 Cucumis sativus Cucsa.388490 I 0.687
GSMUA_Achr4G27350_001 Musa acuminata GSMUA_Achr4G27350_001 I 0.686
Bo6g122640 Brassica oleracea Bo6g122640 I 0.684
POPTR_0002s03960 Populus trichocarpa POPTR_0002s03960 I 0.684
Sb04g031110 Sorghum bicolor Sb04g031110 I 0.684
Si017704m.g Setaria italica Si017704m.g I 0.684
Pavir.Aa01159 Panicum virgatum Pavir.Aa01159 I 0.684
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I 0.684
TCM_020889 Theobroma cacao TCM_020889 I 0.683
MDP0000145050 Malus domestica MDP0000145050 I 0.683
PK03488.1 Cannabis sativa PK03488.1 I 0.683
ATMYB13 Arabidopsis thaliana AT1G06180 D 0.682
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I 0.682
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I 0.682
MTR_1g043080 Medicago truncatula MTR_1g043080 I 0.682
Lus10003557.g Linum usitatissimum Lus10003557.g I 0.682
Lus10033889.g Linum usitatissimum Lus10033889.g I 0.682
Cla006077 Citrullus lanatus Cla006077 I 0.681
Pavir.J10932 Panicum virgatum Pavir.J10932 I 0.681
Bo1g102190 Brassica oleracea Bo1g102190 I 0.680
Bra023742 Brassica rapa Bra023742 I 0.680
F775_18231 Aegilops tauschii F775_18231 I 0.680
GSMUA_Achr2G18090_001 Musa acuminata GSMUA_Achr2G18090_001 I 0.680
Traes_2AL_CC403D182 Triticum aestivum Traes_2AL_CC403D182 I 0.680
Traes_2BL_FD8C2F815 Triticum aestivum Traes_2BL_FD8C2F815 I 0.680
Traes_2DL_54E6F0446 Triticum aestivum Traes_2DL_54E6F0446 I 0.680
Traes_2DL_D39684C41 Triticum aestivum Traes_2DL_D39684C41 I 0.680
TRIUR3_18702 Triticum urartu TRIUR3_18702 I 0.680
mgf011672m Mimulus guttatus mgf011672m I 0.680
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I 0.678
Thhalv10018933m.g Eutrema salsugineum Thhalv10018933m.g I 0.678
BGIOSGA014440 Oryza indica BGIOSGA014440 I 0.677
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I 0.677
OB04G30570 Oryza brachyantha OB04G30570 I 0.677
OBART04G23680 Oryza barthii OBART04G23680 I 0.677
OGLUM04G23630 Oryza glumaepatula OGLUM04G23630 I 0.677
OMERI04G19570 Oryza meridionalis OMERI04G19570 I 0.677
ONIVA04G19740 Oryza nivara ONIVA04G19740 I 0.677
OPUNC04G21230 Oryza punctata OPUNC04G21230 I 0.677
ORGLA04G0202400 Oryza glaberrima ORGLA04G0202400 I 0.677
ORUFI04G25410 Oryza rufipogon ORUFI04G25410 I 0.677
OS04G0594100 Oryza sativa OS04G0594100 I 0.677
Sb06g027180 Sorghum bicolor Sb06g027180 I 0.677
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I 0.677
AC206901.3_FG005 Zea mays AC206901.3_FG005 I 0.676
BRADI3G52260 Brachypodium distachyon BRADI3G52260 I 0.676
F775_14744 Aegilops tauschii F775_14744 I 0.676
MLOC_71418 Hordeum vulgare MLOC_71418 I 0.676
Traes_6AL_C13753B31 Triticum aestivum Traes_6AL_C13753B31 I 0.676
Traes_6DL_8BAAC240D Triticum aestivum Traes_6DL_8BAAC240D I 0.676
TRIUR3_14330 Triticum urartu TRIUR3_14330 I 0.676
GLYMA02G12254 Glycine max GLYMA02G12254 I 0.675
VIT_05s0049g01010 Vitis vinifera VIT_05s0049g01010 I 0.675
Lus10027459.g Linum usitatissimum Lus10027459.g I 0.675
Lus10039214.g Linum usitatissimum Lus10039214.g I 0.675
ATMYB14 Arabidopsis lyrata Al_scaffold_0004_1573 I 0.674
MYB14 Arabidopsis thaliana AT2G31180 I 0.674
Bo4g176020 Brassica oleracea Bo4g176020 I 0.674
Bo4g176030 Brassica oleracea Bo4g176030 I 0.674
Bra018267 Brassica rapa Bra018267 I 0.674
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I 0.674
Solyc03g005570.2 Solanum lycopersicum Solyc03g005570.2 I 0.674
Ca_12226 Cicer arietinum Ca_12226 I 0.674
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I 0.674
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I 0.674
Carubv10023905m.g Capsella rubella Carubv10023905m.g I 0.674
Thhalv10017136m.g Eutrema salsugineum Thhalv10017136m.g I 0.674
GRMZM2G038722 Zea mays GRMZM2G038722 I 0.673
POPTR_0005s24550 Populus trichocarpa POPTR_0005s24550 I 0.673
Si010384m.g Setaria italica Si010384m.g I 0.673
TCM_004046 Theobroma cacao TCM_004046 I 0.673
cassava37350.valid.m1 Manihot esculenta cassava37350.valid.m1 I 0.673
Ciclev10021699m.g Citrus clementina Ciclev10021699m.g I 0.673
evm.TU.supercontig_50.19 Carica papaya evm.TU.supercontig_50.19 I 0.673
Gorai.001G177100 Gossypium raimondii Gorai.001G177100 I 0.673
Gorai.007G146200 Gossypium raimondii Gorai.007G146200 I 0.673
Gorai.013G088200 Gossypium raimondii Gorai.013G088200 I 0.673
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I 0.673
Bo3g025100 Brassica oleracea Bo3g025100 I 0.672
Bo6g077600 Brassica oleracea Bo6g077600 I 0.672
Aquca_017_00716 Aquilegia coerulea Aquca_017_00716 I 0.671
Eucgr.B02144 Eucalyptus grandis Eucgr.B02144 I 0.671
Eucgr.K03262 Eucalyptus grandis Eucgr.K03262 I 0.671
GLYMA03G41100 Glycine max GLYMA03G41100 I 0.670
VIT_05s0049g01020 Vitis vinifera VIT_05s0049g01020 I 0.670
SapurV1A.0233s0280 Salix purpurea SapurV1A.0233s0280 I 0.670
Bo5g007320 Brassica oleracea Bo5g007320 I 0.669
Bra015481 Brassica rapa Bra015481 I 0.669
BRADI5G20130 Brachypodium distachyon BRADI5G20130 I 0.669
GLYMA01G44370 Glycine max GLYMA01G44370 I 0.669
GLYMA11G01150 Glycine max GLYMA11G01150 I 0.669
Lus10021185.g Linum usitatissimum Lus10021185.g I 0.668
cassava34465.m1 Manihot esculenta cassava34465.m1 I 0.667
Lus10041145.g Linum usitatissimum Lus10041145.g I 0.667
MTR_4g478180 Medicago truncatula MTR_4g478180 I 0.666
TCM_025488 Theobroma cacao TCM_025488 I 0.666
ORGLA04G0158700 Oryza glaberrima ORGLA04G0158700 I 0.665
ORUFI04G20280 Oryza rufipogon ORUFI04G20280 I 0.665
Sb06g022660 Sorghum bicolor Sb06g022660 I 0.665
VIT_07s0005g03340 Vitis vinifera VIT_07s0005g03340 I 0.664
PGSC0003DMG400006408 Solanum tuberosum PGSC0003DMG400006408 I 0.663
Solyc04g074170.1 Solanum lycopersicum Solyc04g074170.1 I 0.663
evm.TU.supercontig_36.134 Carica papaya evm.TU.supercontig_36.134 I 0.663
Lus10036472.g Linum usitatissimum Lus10036472.g I 0.663
Lus10041142.g Linum usitatissimum Lus10041142.g I 0.663
Bra035097 Brassica rapa Bra035097 I 0.662
ONIVA04G17140 Oryza nivara ONIVA04G17140 I 0.662
PGSC0003DMG400017525 Solanum tuberosum PGSC0003DMG400017525 I 0.662
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.662
orange1.1g024492m.g Citrus sinensis orange1.1g024492m.g I 0.662
Bra022831 Brassica rapa Bra022831 I 0.661
Cla019747 Citrullus lanatus Cla019747 I 0.661
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.661
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.661