Lus10031758.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10031758.g T288137_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.746 0.852
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.746 0.852
AtMYB10
M07081_2.00 		Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB10_col_a 		0.730 0.815
AtMYB10
M07082_2.00 		Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB10_colamp_a 		0.730 0.815
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.667 0.753
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.667 0.753
MYB15
M07084_2.00 		Arabidopsis thaliana
NNNHNNHHNHHYCACCWAMYH
DRKTWGGTGRDDNDDNNDNNN		 Dap-seq
OMalley et al.(2016)
ATY19_col_a 		0.661 0.778
MYB15
M02699_2.00 		Arabidopsis thaliana
CCACCTACCSBBG
CVVSGGTAGGTGG		 SELEX
Mathelier et al.(2014)
MA0574.1 		0.661 0.778
MYB15
M11041_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_01 		0.661 0.778
MYB15
M11042_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_Q2 		0.661 0.778
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10031758 Myb 1 36
Lus10031758 Myb 42 87

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA15G41255 Glycine max GLYMA15G41255 I 0.758
POPTR_0007s08190 Populus trichocarpa POPTR_0007s08190 I 0.758
TCM_032927 Theobroma cacao TCM_032927 I 0.758
30169.m006322 Ricinus communis 30169.m006322 I 0.758
Gorai.002G106300 Gossypium raimondii Gorai.002G106300 I 0.756
POPTR_0005s09930 Populus trichocarpa POPTR_0005s09930 I 0.753
PGSC0003DMG400038913 Solanum tuberosum PGSC0003DMG400038913 I 0.750
Ciclev10005102m.g Citrus clementina Ciclev10005102m.g I 0.750
orange1.1g045411m.g Citrus sinensis orange1.1g045411m.g I 0.750
MYB58 Arabidopsis thaliana AT1G16490 D 0.746
Bo8g105490 Brassica oleracea Bo8g105490 I 0.746
Bra026720 Brassica rapa Bra026720 I 0.746
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.746
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.746
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.746
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.746
GLYMA08G17861 Glycine max GLYMA08G17861 I 0.742
PGSC0003DMG400011243 Solanum tuberosum PGSC0003DMG400011243 I 0.742
Solyc10g005550.1 Solanum lycopersicum Solyc10g005550.1 I 0.742
SapurV1A.0284s0110 Salix purpurea SapurV1A.0284s0110 I 0.742
ATMYB63 Arabidopsis thaliana AT1G79180 D 0.741
ATMYB63 Arabidopsis lyrata fgenesh2_kg.2__2216__AT1G79180.1 I 0.741
Bostr.20129s0353 Boechera stricta Bostr.20129s0353 I 0.741
Cagra.1361s0065 Capsella grandiflora Cagra.1361s0065 I 0.741
Carubv10020691m.g Capsella rubella Carubv10020691m.g I 0.741
Bo6g081140 Brassica oleracea Bo6g081140 I 0.738
Bra003619 Brassica rapa Bra003619 I 0.738
SapurV1A.0085s0540 Salix purpurea SapurV1A.0085s0540 I 0.738
MTR_2g067420 Medicago truncatula MTR_2g067420 I 0.736
Thhalv10021926m.g Eutrema salsugineum Thhalv10021926m.g I 0.735
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.730
AtMYB10 Arabidopsis lyrata fgenesh2_kg.3__1346__AT3G12820.1 I 0.730
Bostr.3640s0057 Boechera stricta Bostr.3640s0057 I 0.730
Cagra.5641s0047 Capsella grandiflora Cagra.5641s0047 I 0.730
Carubv10016289m.g Capsella rubella Carubv10016289m.g I 0.730
BGIOSGA005798 Oryza indica BGIOSGA005798 I 0.729
BGIOSGA014440 Oryza indica BGIOSGA014440 I 0.729
LPERR02G23410 Leersia perrieri LPERR02G23410 I 0.729
OB02G35920 Oryza brachyantha OB02G35920 I 0.729
OB04G30570 Oryza brachyantha OB04G30570 I 0.729
OBART02G28790 Oryza barthii OBART02G28790 I 0.729
OBART04G23680 Oryza barthii OBART04G23680 I 0.729
OGLUM02G29380 Oryza glumaepatula OGLUM02G29380 I 0.729
OGLUM04G23630 Oryza glumaepatula OGLUM04G23630 I 0.729
OLONG_022853 Oryza longistaminata OLONG_022853 I 0.729
OMERI02G27850 Oryza meridionalis OMERI02G27850 I 0.729
OMERI04G19570 Oryza meridionalis OMERI04G19570 I 0.729
ONIVA02G31530 Oryza nivara ONIVA02G31530 I 0.729
ONIVA04G19740 Oryza nivara ONIVA04G19740 I 0.729
OPUNC02G26430 Oryza punctata OPUNC02G26430 I 0.729
OPUNC04G21230 Oryza punctata OPUNC04G21230 I 0.729
ORGLA04G0202400 Oryza glaberrima ORGLA04G0202400 I 0.729
ORUFI02G30350 Oryza rufipogon ORUFI02G30350 I 0.729
ORUFI04G25410 Oryza rufipogon ORUFI04G25410 I 0.729
OS02G0695200 Oryza sativa OS02G0695200 I 0.729
OS04G0594100 Oryza sativa OS04G0594100 I 0.729
Sb06g027180 Sorghum bicolor Sb06g027180 I 0.729
Cucsa.118450 Cucumis sativus Cucsa.118450 I 0.729
Gorai.004G269400 Gossypium raimondii Gorai.004G269400 I 0.729
Si017704m.g Setaria italica Si017704m.g I 0.728
VIT_19s0085g00050 Vitis vinifera VIT_19s0085g00050 I 0.728
GRMZM2G038722 Zea mays GRMZM2G038722 I 0.725
Sb04g031110 Sorghum bicolor Sb04g031110 I 0.725
Si010384m.g Setaria italica Si010384m.g I 0.725
Pavir.Aa01159 Panicum virgatum Pavir.Aa01159 I 0.725
Bo3g065150 Brassica oleracea Bo3g065150 I 0.724
Bostr.7128s0256 Boechera stricta Bostr.7128s0256 I 0.722
Pavir.J10932 Panicum virgatum Pavir.J10932 I 0.722
BRADI5G20130 Brachypodium distachyon BRADI5G20130 I 0.721
F775_18231 Aegilops tauschii F775_18231 I 0.721
MLOC_53640 Hordeum vulgare MLOC_53640 I 0.721
PRUPE_ppa026315mg Prunus persica PRUPE_ppa026315mg I 0.721
Traes_2AL_CC403D182 Triticum aestivum Traes_2AL_CC403D182 I 0.721
Traes_2BL_FD8C2F815 Triticum aestivum Traes_2BL_FD8C2F815 I 0.721
Traes_2DL_54E6F0446 Triticum aestivum Traes_2DL_54E6F0446 I 0.721
Traes_2DL_D39684C41 Triticum aestivum Traes_2DL_D39684C41 I 0.721
TRIUR3_18702 Triticum urartu TRIUR3_18702 I 0.721
Pm011057 Prunus mume Pm011057 I 0.721
gene29961-v1.0-hybrid Fragaria vesca gene29961-v1.0-hybrid I 0.721
GSMUA_Achr5G03520_001 Musa acuminata GSMUA_Achr5G03520_001 I 0.720
Bo6g122640 Brassica oleracea Bo6g122640 I 0.717
BRADI3G52260 Brachypodium distachyon BRADI3G52260 I 0.717
F775_14744 Aegilops tauschii F775_14744 I 0.717
MLOC_71418 Hordeum vulgare MLOC_71418 I 0.717
Traes_6AL_C13753B31 Triticum aestivum Traes_6AL_C13753B31 I 0.717
Traes_6DL_8BAAC240D Triticum aestivum Traes_6DL_8BAAC240D I 0.717
TRIUR3_14330 Triticum urartu TRIUR3_14330 I 0.717
Ciclev10005629m.g Citrus clementina Ciclev10005629m.g I 0.715
orange1.1g024484m.g Citrus sinensis orange1.1g024484m.g I 0.715
Aquca_030_00385 Aquilegia coerulea Aquca_030_00385 I 0.714
Cagra.0998s0005 Capsella grandiflora Cagra.0998s0005 I 0.714
Carubv10003283m.g Capsella rubella Carubv10003283m.g I 0.714
Gorai.011G173900 Gossypium raimondii Gorai.011G173900 I 0.713
PRUPE_ppa020190mg Prunus persica PRUPE_ppa020190mg I 0.711
Pm009364 Prunus mume Pm009364 I 0.711
MDP0000230141 Malus domestica MDP0000230141 I 0.711
MDP0000435315 Malus domestica MDP0000435315 I 0.711
Thhalv10018933m.g Eutrema salsugineum Thhalv10018933m.g I 0.711
PGSC0003DMG400023405 Solanum tuberosum PGSC0003DMG400023405 I 0.710
Solyc05g055030.1 Solanum lycopersicum Solyc05g055030.1 I 0.710
Bra001472 Brassica rapa Bra001472 I 0.708
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.708
MDP0000133542 Malus domestica MDP0000133542 I 0.708
cassava35427.valid.m1 Manihot esculenta cassava35427.valid.m1 I 0.706
PK20358.1 Cannabis sativa PK20358.1 I 0.706
GSMUA_Achr11G17870_001 Musa acuminata GSMUA_Achr11G17870_001 I 0.705
GRMZM2G097636 Zea mays GRMZM2G097636 I 0.704
GRMZM2G097638 Zea mays GRMZM2G097638 I 0.704
Cla013669 Citrullus lanatus Cla013669 I 0.704
Pavir.Gb00587 Panicum virgatum Pavir.Gb00587 I 0.704
PK03488.1 Cannabis sativa PK03488.1 I 0.704
GLYMA10G32410 Glycine max GLYMA10G32410 I 0.702
GLYMA20G35180 Glycine max GLYMA20G35180 I 0.702
GRMZM5G833253 Zea mays GRMZM5G833253 I 0.700
Pavir.Ga00752 Panicum virgatum Pavir.Ga00752 I 0.700
TCM_020889 Theobroma cacao TCM_020889 I 0.698
Bo5g021910 Brassica oleracea Bo5g021910 I 0.697
Bra026048 Brassica rapa Bra026048 I 0.697
Ca_12130 Cicer arietinum Ca_12130 I 0.697
Cla019747 Citrullus lanatus Cla019747 I 0.697
Cla021845 Citrullus lanatus Cla021845 I 0.697
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.697
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I 0.697
Bra035097 Brassica rapa Bra035097 I 0.696
ATMYB72 Arabidopsis thaliana AT1G56160 I 0.695
GSMUA_Achr2G18090_001 Musa acuminata GSMUA_Achr2G18090_001 I 0.695
MDP0000215675 Malus domestica MDP0000215675 I 0.695
Aquca_017_00716 Aquilegia coerulea Aquca_017_00716 I 0.694
GSMUA_Achr4G27350_001 Musa acuminata GSMUA_Achr4G27350_001 I 0.693
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I 0.693
Bo1g138940 Brassica oleracea Bo1g138940 I 0.692
Bo3g081700 Brassica oleracea Bo3g081700 I 0.691
Bo7g040780 Brassica oleracea Bo7g040780 I 0.691
Bra001907 Brassica rapa Bra001907 I 0.691
Bra014929 Brassica rapa Bra014929 I 0.691
MYB15 Arabidopsis lyrata fgenesh2_kg.3__2539__AT3G23250.1 I 0.691
Traes_2BL_34A0848F2 Triticum aestivum Traes_2BL_34A0848F2 I 0.691
Bostr.19424s0318 Boechera stricta Bostr.19424s0318 I 0.691
Cagra.2181s0015 Capsella grandiflora Cagra.2181s0015 I 0.691
Carubv10015750m.g Capsella rubella Carubv10015750m.g I 0.691
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I 0.691
Thhalv10022110m.g Eutrema salsugineum Thhalv10022110m.g I 0.691
Bo3g185830 Brassica oleracea Bo3g185830 I 0.690
Bra030812 Brassica rapa Bra030812 I 0.690
F775_30010 Aegilops tauschii F775_30010 I 0.690
ATMYB72 Arabidopsis lyrata fgenesh2_kg.1__4638__AT1G56160.1 I 0.690
Bostr.6758s0073 Boechera stricta Bostr.6758s0073 I 0.690
Thhalv10012163m.g Eutrema salsugineum Thhalv10012163m.g I 0.690
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I 0.689
GSMUA_Achr11G00410_001 Musa acuminata GSMUA_Achr11G00410_001 I 0.689
PGSC0003DMG400020071 Solanum tuberosum PGSC0003DMG400020071 I 0.689
Solyc06g083900.2 Solanum lycopersicum Solyc06g083900.2 I 0.689
BRADI5G15760 Brachypodium distachyon BRADI5G15760 I 0.685
GSMUA_Achr6G31520_001 Musa acuminata GSMUA_Achr6G31520_001 I 0.685
ORGLA04G0158700 Oryza glaberrima ORGLA04G0158700 I 0.685
ORUFI04G20280 Oryza rufipogon ORUFI04G20280 I 0.685
POPTR_0002s03960 Populus trichocarpa POPTR_0002s03960 I 0.685
POPTR_0005s24550 Populus trichocarpa POPTR_0005s24550 I 0.685
cassava37350.valid.m1 Manihot esculenta cassava37350.valid.m1 I 0.685
Ciclev10021699m.g Citrus clementina Ciclev10021699m.g I 0.685
Eucgr.H00158 Eucalyptus grandis Eucgr.H00158 I 0.685
Eucgr.B02144 Eucalyptus grandis Eucgr.B02144 I 0.683
Ciclev10022057m.g Citrus clementina Ciclev10022057m.g I 0.682
LPERR04G19390 Leersia perrieri LPERR04G19390 I 0.681
ONIVA04G17140 Oryza nivara ONIVA04G17140 I 0.681
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I 0.679
cassava41325.m1 Manihot esculenta cassava41325.m1 I 0.678
PGSC0003DMG400013405 Solanum tuberosum PGSC0003DMG400013405 I 0.677
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.677
GLYMA03G31980 Glycine max GLYMA03G31980 I 0.676
MTR_1g043080 Medicago truncatula MTR_1g043080 I 0.675
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I 0.675
GLYMA01G06192 Glycine max GLYMA01G06192 I 0.674
GLYMA02G12254 Glycine max GLYMA02G12254 I 0.674
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.674
orange1.1g024492m.g Citrus sinensis orange1.1g024492m.g I 0.674
PK08038.1 Cannabis sativa PK08038.1 I 0.674
Solyc03g005570.2 Solanum lycopersicum Solyc03g005570.2 I 0.673
TCM_004046 Theobroma cacao TCM_004046 I 0.673
Cla006077 Citrullus lanatus Cla006077 I 0.673
Cucsa.053600 Cucumis sativus Cucsa.053600 I 0.673
evm.TU.supercontig_50.19 Carica papaya evm.TU.supercontig_50.19 I 0.673
Gorai.001G177100 Gossypium raimondii Gorai.001G177100 I 0.673
Gorai.007G146200 Gossypium raimondii Gorai.007G146200 I 0.673
MTR_1g076150 Medicago truncatula MTR_1g076150 I 0.672
VIT_05s0049g01020 Vitis vinifera VIT_05s0049g01020 I 0.672
Pavir.Ia03281 Panicum virgatum Pavir.Ia03281 I 0.672
SapurV1A.0233s0280 Salix purpurea SapurV1A.0233s0280 I 0.672
Traes_6AL_BB730675A Triticum aestivum Traes_6AL_BB730675A I 0.671
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I 0.669
Bra039344 Brassica rapa Bra039344 I 0.668
ATMYB14 Arabidopsis lyrata Al_scaffold_0004_1573 I 0.667
ATMYB13 Arabidopsis thaliana AT1G06180 D 0.667
MYB14 Arabidopsis thaliana AT2G31180 I 0.667
Bo4g176020 Brassica oleracea Bo4g176020 I 0.667
Bo4g176030 Brassica oleracea Bo4g176030 I 0.667
Bra018267 Brassica rapa Bra018267 I 0.667
Bra021708 Brassica rapa Bra021708 I 0.667
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I 0.667
ORUFI09G18880 Oryza rufipogon ORUFI09G18880 I 0.667
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.667
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I 0.667
Cagra.1671s0249 Capsella grandiflora Cagra.1671s0249 I 0.667
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I 0.667
Carubv10023905m.g Capsella rubella Carubv10023905m.g I 0.667
Lus10021185.g Linum usitatissimum Lus10021185.g I 0.667
SapurV1A.0483s0100 Salix purpurea SapurV1A.0483s0100 I 0.667
SapurV1A.1746s0010 Salix purpurea SapurV1A.1746s0010 I 0.667
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I 0.667
Thhalv10017136m.g Eutrema salsugineum Thhalv10017136m.g I 0.667
POPTR_0008s16660 Populus trichocarpa POPTR_0008s16660 I 0.666
mgf011672m Mimulus guttatus mgf011672m I 0.666
MDP0000168728 Malus domestica MDP0000168728 I 0.666
PDK_20s1427521g001 Phoenix dactylifera PDK_20s1427521g001 I 0.665
Bo3g025100 Brassica oleracea Bo3g025100 I 0.664
GSMUA_Achr4G18180_001 Musa acuminata GSMUA_Achr4G18180_001 I 0.664
Sb01g019270 Sorghum bicolor Sb01g019270 I 0.664
Si040527m.g Setaria italica Si040527m.g I 0.664
VIT_05s0049g01010 Vitis vinifera VIT_05s0049g01010 I 0.664
VIT_07s0005g03340 Vitis vinifera VIT_07s0005g03340 I 0.664
MDP0000145050 Malus domestica MDP0000145050 I 0.664
Pavir.Ia01684 Panicum virgatum Pavir.Ia01684 I 0.664
Pavir.J09313 Panicum virgatum Pavir.J09313 I 0.664
Cucsa.388490 Cucumis sativus Cucsa.388490 I 0.663
Bo3g012180 Brassica oleracea Bo3g012180 I 0.662
Bo5g007320 Brassica oleracea Bo5g007320 I 0.662
Bra006370 Brassica rapa Bra006370 I 0.662
Bra015481 Brassica rapa Bra015481 I 0.662
Gorai.008G151100 Gossypium raimondii Gorai.008G151100 I 0.662
MYB15 Arabidopsis thaliana AT3G23250 D 0.661
Bo1g102190 Brassica oleracea Bo1g102190 I 0.661
Bra023742 Brassica rapa Bra023742 I 0.661
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I 0.661
TCM_026197 Theobroma cacao TCM_026197 I 0.661
Cla007705 Citrullus lanatus Cla007705 I 0.661
Cucsa.383620 Cucumis sativus Cucsa.383620 I 0.661
Aquca_034_00364 Aquilegia coerulea Aquca_034_00364 I 0.661
chr5.CM0071.410.nd Lotus japonicus chr5.CM0071.410.nd I 0.661