Bra026048 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra026048 T267998_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.802 0.903
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.802 0.903
AtMYB10
M07081_2.00 		Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB10_col_a 		0.688 0.753
AtMYB10
M07082_2.00 		Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB10_colamp_a 		0.688 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra026048.1-P Myb 16 63
Bra026048.1-P Myb 69 114

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g021910 Brassica oleracea Bo5g021910 I 0.909
Bo8g105490 Brassica oleracea Bo8g105490 I 0.811
Bra026720 Brassica rapa Bra026720 I 0.811
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.811
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.811
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.811
MYB58 Arabidopsis thaliana AT1G16490 D 0.802
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.802
Bostr.7128s0256 Boechera stricta Bostr.7128s0256 I 0.786
Bo6g122640 Brassica oleracea Bo6g122640 I 0.781
ATMYB63 Arabidopsis lyrata fgenesh2_kg.2__2216__AT1G79180.1 I 0.767
Bostr.20129s0353 Boechera stricta Bostr.20129s0353 I 0.767
Bo6g081140 Brassica oleracea Bo6g081140 I 0.763
Bra003619 Brassica rapa Bra003619 I 0.763
Bra035097 Brassica rapa Bra035097 I 0.760
GLYMA15G41255 Glycine max GLYMA15G41255 I 0.760
ATMYB63 Arabidopsis thaliana AT1G79180 D 0.758
Cagra.1361s0065 Capsella grandiflora Cagra.1361s0065 I 0.758
Carubv10020691m.g Capsella rubella Carubv10020691m.g I 0.758
MTR_2g067420 Medicago truncatula MTR_2g067420 I 0.756
Thhalv10018933m.g Eutrema salsugineum Thhalv10018933m.g I 0.754
Ciclev10005102m.g Citrus clementina Ciclev10005102m.g I 0.749
orange1.1g045411m.g Citrus sinensis orange1.1g045411m.g I 0.749
PGSC0003DMG400038913 Solanum tuberosum PGSC0003DMG400038913 I 0.738
GLYMA08G17861 Glycine max GLYMA08G17861 I 0.736
Gorai.002G106300 Gossypium raimondii Gorai.002G106300 I 0.734
SapurV1A.0085s0540 Salix purpurea SapurV1A.0085s0540 I 0.729
POPTR_0007s08190 Populus trichocarpa POPTR_0007s08190 I 0.727
TCM_032927 Theobroma cacao TCM_032927 I 0.727
PGSC0003DMG400011243 Solanum tuberosum PGSC0003DMG400011243 I 0.725
Solyc10g005550.1 Solanum lycopersicum Solyc10g005550.1 I 0.725
POPTR_0005s09930 Populus trichocarpa POPTR_0005s09930 I 0.722
Aquca_030_00385 Aquilegia coerulea Aquca_030_00385 I 0.717
30169.m006322 Ricinus communis 30169.m006322 I 0.716
Si017704m.g Setaria italica Si017704m.g I 0.708
Pavir.Aa01159 Panicum virgatum Pavir.Aa01159 I 0.708
SapurV1A.0284s0110 Salix purpurea SapurV1A.0284s0110 I 0.708
F775_18231 Aegilops tauschii F775_18231 I 0.707
Traes_2AL_CC403D182 Triticum aestivum Traes_2AL_CC403D182 I 0.707
Traes_2BL_FD8C2F815 Triticum aestivum Traes_2BL_FD8C2F815 I 0.707
Traes_2DL_54E6F0446 Triticum aestivum Traes_2DL_54E6F0446 I 0.707
Traes_2DL_D39684C41 Triticum aestivum Traes_2DL_D39684C41 I 0.707
TRIUR3_18702 Triticum urartu TRIUR3_18702 I 0.707
Pavir.J10932 Panicum virgatum Pavir.J10932 I 0.705
Gorai.011G173900 Gossypium raimondii Gorai.011G173900 I 0.703
Thhalv10021926m.g Eutrema salsugineum Thhalv10021926m.g I 0.701
gene29961-v1.0-hybrid Fragaria vesca gene29961-v1.0-hybrid I 0.699
LPERR02G23410 Leersia perrieri LPERR02G23410 I 0.698
MLOC_53640 Hordeum vulgare MLOC_53640 I 0.698
OPUNC02G26430 Oryza punctata OPUNC02G26430 I 0.698
Cucsa.118450 Cucumis sativus Cucsa.118450 I 0.698
Gorai.004G269400 Gossypium raimondii Gorai.004G269400 I 0.698
MDP0000215675 Malus domestica MDP0000215675 I 0.698
Lus10031758.g Linum usitatissimum Lus10031758.g I 0.697
cassava35427.valid.m1 Manihot esculenta cassava35427.valid.m1 I 0.696
OB02G35920 Oryza brachyantha OB02G35920 I 0.695
Sb04g031110 Sorghum bicolor Sb04g031110 I 0.694
Ca_12130 Cicer arietinum Ca_12130 I 0.694
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I 0.694
Carubv10023905m.g Capsella rubella Carubv10023905m.g I 0.694
MTR_1g043080 Medicago truncatula MTR_1g043080 I 0.692
cassava38174.valid.m1 Manihot esculenta cassava38174.valid.m1 I 0.692
PRUPE_ppa026315mg Prunus persica PRUPE_ppa026315mg I 0.690
Pm011057 Prunus mume Pm011057 I 0.690
BGIOSGA005798 Oryza indica BGIOSGA005798 I 0.689
GLYMA10G32410 Glycine max GLYMA10G32410 I 0.689
GLYMA20G35180 Glycine max GLYMA20G35180 I 0.689
OBART02G28790 Oryza barthii OBART02G28790 I 0.689
OGLUM02G29380 Oryza glumaepatula OGLUM02G29380 I 0.689
OLONG_022853 Oryza longistaminata OLONG_022853 I 0.689
OMERI02G27850 Oryza meridionalis OMERI02G27850 I 0.689
ONIVA02G31530 Oryza nivara ONIVA02G31530 I 0.689
ORUFI02G30350 Oryza rufipogon ORUFI02G30350 I 0.689
OS02G0695200 Oryza sativa OS02G0695200 I 0.689
ATMYB14 Arabidopsis lyrata Al_scaffold_0004_1573 I 0.688
MYB14 Arabidopsis thaliana AT2G31180 I 0.688
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.688
AtMYB10 Arabidopsis lyrata fgenesh2_kg.3__1346__AT3G12820.1 I 0.688
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I 0.688
Bostr.3640s0057 Boechera stricta Bostr.3640s0057 I 0.688
Cagra.5641s0047 Capsella grandiflora Cagra.5641s0047 I 0.688
Carubv10016289m.g Capsella rubella Carubv10016289m.g I 0.688
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.688
Bo5g007320 Brassica oleracea Bo5g007320 I 0.687
Bra015481 Brassica rapa Bra015481 I 0.687
BRADI3G52260 Brachypodium distachyon BRADI3G52260 I 0.687
Sb06g027180 Sorghum bicolor Sb06g027180 I 0.687
Ciclev10005629m.g Citrus clementina Ciclev10005629m.g I 0.687
orange1.1g024484m.g Citrus sinensis orange1.1g024484m.g I 0.687
MDP0000133542 Malus domestica MDP0000133542 I 0.686
VIT_19s0085g00050 Vitis vinifera VIT_19s0085g00050 I 0.685
BGIOSGA014440 Oryza indica BGIOSGA014440 I 0.684
OB04G30570 Oryza brachyantha OB04G30570 I 0.684
OBART04G23680 Oryza barthii OBART04G23680 I 0.684
OGLUM04G23630 Oryza glumaepatula OGLUM04G23630 I 0.684
OMERI04G19570 Oryza meridionalis OMERI04G19570 I 0.684
ONIVA04G19740 Oryza nivara ONIVA04G19740 I 0.684
OPUNC04G21230 Oryza punctata OPUNC04G21230 I 0.684
ORGLA04G0202400 Oryza glaberrima ORGLA04G0202400 I 0.684
ORUFI04G25410 Oryza rufipogon ORUFI04G25410 I 0.684
OS04G0594100 Oryza sativa OS04G0594100 I 0.684
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I 0.684
Bo3g081700 Brassica oleracea Bo3g081700 I 0.683
Bo7g040780 Brassica oleracea Bo7g040780 I 0.683
Bra001907 Brassica rapa Bra001907 I 0.683
Bra014929 Brassica rapa Bra014929 I 0.683
Si010384m.g Setaria italica Si010384m.g I 0.683
Bostr.19424s0318 Boechera stricta Bostr.19424s0318 I 0.683
Cagra.0998s0005 Capsella grandiflora Cagra.0998s0005 I 0.683
Cagra.2181s0015 Capsella grandiflora Cagra.2181s0015 I 0.683
Carubv10003283m.g Capsella rubella Carubv10003283m.g I 0.683
Carubv10015750m.g Capsella rubella Carubv10015750m.g I 0.683
Thhalv10022110m.g Eutrema salsugineum Thhalv10022110m.g I 0.683
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.682
Bo3g065150 Brassica oleracea Bo3g065150 I 0.681
F775_14744 Aegilops tauschii F775_14744 I 0.681
MLOC_71418 Hordeum vulgare MLOC_71418 I 0.681
PRUPE_ppa020190mg Prunus persica PRUPE_ppa020190mg I 0.681
Traes_6AL_C13753B31 Triticum aestivum Traes_6AL_C13753B31 I 0.681
Traes_6DL_8BAAC240D Triticum aestivum Traes_6DL_8BAAC240D I 0.681
TRIUR3_14330 Triticum urartu TRIUR3_14330 I 0.681
Pm009364 Prunus mume Pm009364 I 0.681
MDP0000230141 Malus domestica MDP0000230141 I 0.681
MDP0000435315 Malus domestica MDP0000435315 I 0.681
MYB15 Arabidopsis lyrata fgenesh2_kg.3__2539__AT3G23250.1 I 0.680
GRMZM2G038722 Zea mays GRMZM2G038722 I 0.680
BRADI5G20130 Brachypodium distachyon BRADI5G20130 I 0.679
GSMUA_Achr5G03520_001 Musa acuminata GSMUA_Achr5G03520_001 I 0.678
PK20358.1 Cannabis sativa PK20358.1 I 0.678
Traes_2BL_34A0848F2 Triticum aestivum Traes_2BL_34A0848F2 I 0.677
Aquca_017_00716 Aquilegia coerulea Aquca_017_00716 I 0.677
Lus10021185.g Linum usitatissimum Lus10021185.g I 0.676
Cla013669 Citrullus lanatus Cla013669 I 0.674
PGSC0003DMG400023405 Solanum tuberosum PGSC0003DMG400023405 I 0.673
Solyc05g055030.1 Solanum lycopersicum Solyc05g055030.1 I 0.673
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I 0.671
F775_30010 Aegilops tauschii F775_30010 I 0.670
MTR_1g076150 Medicago truncatula MTR_1g076150 I 0.670
TCM_020889 Theobroma cacao TCM_020889 I 0.670
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.670
GRMZM5G833253 Zea mays GRMZM5G833253 I 0.669
Cla021845 Citrullus lanatus Cla021845 I 0.669
Eucgr.H00158 Eucalyptus grandis Eucgr.H00158 I 0.667
PK03488.1 Cannabis sativa PK03488.1 I 0.667
GLYMA13G37903 Glycine max GLYMA13G37903 I 0.666
Bra001472 Brassica rapa Bra001472 I 0.665
GSMUA_Achr6G31520_001 Musa acuminata GSMUA_Achr6G31520_001 I 0.665
ATMYB72 Arabidopsis thaliana AT1G56160 I 0.664
GRMZM2G097636 Zea mays GRMZM2G097636 I 0.663
GRMZM2G097638 Zea mays GRMZM2G097638 I 0.663
PGSC0003DMG400020071 Solanum tuberosum PGSC0003DMG400020071 I 0.663
Solyc06g083900.2 Solanum lycopersicum Solyc06g083900.2 I 0.663
Pavir.Gb00587 Panicum virgatum Pavir.Gb00587 I 0.663
GSMUA_Achr4G18180_001 Musa acuminata GSMUA_Achr4G18180_001 I 0.662