Bra008169 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra008169 T267793_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.727 0.872
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.727 0.872
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.727 0.872
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.727 0.830
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.716 0.830
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.709 0.809
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.688 0.745
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.680 0.787
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.680 0.787
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.680 0.787
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.678 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra008169.1-P Myb 84 131

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g082370 Brassica oleracea Bo2g082370 I 0.883
Bra015890 Brassica rapa Bra015890 I 0.787
Bo6g119010 Brassica oleracea Bo6g119010 I 0.776
Thhalv10018822m.g Eutrema salsugineum Thhalv10018822m.g I 0.776
LjB09A03.30.nc Lotus japonicus LjB09A03.30.nc I 0.774
Gorai.003G071500 Gossypium raimondii Gorai.003G071500 I 0.767
GLYMA06G05450 Glycine max GLYMA06G05450 I 0.756
LjSGA_061558.1 Lotus japonicus LjSGA_061558.1 I 0.749
GLYMA18G17143 Glycine max GLYMA18G17143 I 0.745
PGSC0003DMG400034516 Solanum tuberosum PGSC0003DMG400034516 N 0.739
GLYMA04G05390 Glycine max GLYMA04G05390 I 0.735
Cla010296 Citrullus lanatus Cla010296 I 0.734
AT1G74840 Arabidopsis thaliana AT1G74840 D 0.727
MLOC_20277 Hordeum vulgare MLOC_20277 I 0.727
PGSC0003DMG400001913 Solanum tuberosum PGSC0003DMG400001913 I 0.727
PGSC0003DMG400033030 Solanum tuberosum PGSC0003DMG400033030 I 0.727
POPTR_0008s19610 Populus trichocarpa POPTR_0008s19610 I 0.727
POPTR_0010s04860 Populus trichocarpa POPTR_0010s04860 I 0.727
PRUPE_ppa009283mg Prunus persica PRUPE_ppa009283mg I 0.727
Solyc03g113620.2 Solanum lycopersicum Solyc03g113620.2 I 0.727
Solyc04g005100.2 Solanum lycopersicum Solyc04g005100.2 I 0.727
Solyc06g071230.2 Solanum lycopersicum Solyc06g071230.2 I 0.727
TCM_013524 Theobroma cacao TCM_013524 I 0.727
Traes_3AS_6626D4A69 Triticum aestivum Traes_3AS_6626D4A69 I 0.727
Traes_3DS_8AF1A10AB Triticum aestivum Traes_3DS_8AF1A10AB I 0.727
VIT_17s0000g07510 Vitis vinifera VIT_17s0000g07510 I 0.727
Ca_17597 Cicer arietinum Ca_17597 I 0.727
Pm024648 Prunus mume Pm024648 I 0.727
30147.m014028 Ricinus communis 30147.m014028 I 0.727
cassava17572.valid.m1 Manihot esculenta cassava17572.valid.m1 I 0.727
cassava23010.valid.m1 Manihot esculenta cassava23010.valid.m1 I 0.727
cassava23011.valid.m1 Manihot esculenta cassava23011.valid.m1 I 0.727
Cucsa.098110 Cucumis sativus Cucsa.098110 I 0.727
Ciclev10021454m.g Citrus clementina Ciclev10021454m.g I 0.727
evm.TU.supercontig_5.314 Carica papaya evm.TU.supercontig_5.314 I 0.727
Gorai.007G034000 Gossypium raimondii Gorai.007G034000 I 0.727
Lus10036652.g Linum usitatissimum Lus10036652.g I 0.727
MDP0000230601 Malus domestica MDP0000230601 I 0.727
orange1.1g022562m.g Citrus sinensis orange1.1g022562m.g I 0.727
SapurV1A.0007s0060 Salix purpurea SapurV1A.0007s0060 I 0.727
SapurV1A.0113s0280 Salix purpurea SapurV1A.0113s0280 I 0.727
PK17526.1 Cannabis sativa PK17526.1 D 0.727
chr2.CM0028.230.nd Lotus japonicus chr2.CM0028.230.nd I 0.727
MTR_3g104370 Medicago truncatula MTR_3g104370 I 0.724
Solyc11g050730.1 Solanum lycopersicum Solyc11g050730.1 N 0.721
POPTR_0012s07560 Populus trichocarpa POPTR_0012s07560 I 0.718
GLYMA05G01640 Glycine max GLYMA05G01640 I 0.717
GLYMA17G10250 Glycine max GLYMA17G10250 I 0.717
mgf003276m Mimulus guttatus mgf003276m I 0.717
gene09510-v1.0-hybrid Fragaria vesca gene09510-v1.0-hybrid I 0.717
LjSGA_014616.1 Lotus japonicus LjSGA_014616.1 I 0.717
fgenesh2_kg.2__1750__AT1G74840.1 Arabidopsis lyrata fgenesh2_kg.2__1750__AT1G74840.1 I 0.716
Bostr.3288s0130 Boechera stricta Bostr.3288s0130 I 0.716
Cagra.0402s0045 Capsella grandiflora Cagra.0402s0045 I 0.716
Carubv10020668m.g Capsella rubella Carubv10020668m.g I 0.716
PK23829.1 Cannabis sativa PK23829.1 D 0.716
GLYMA17G34791 Glycine max GLYMA17G34791 I 0.715
Solyc05g013420.1 Solanum lycopersicum Solyc05g013420.1 I 0.715
SELMODRAFT_84280 Selaginella moellendorffii SELMODRAFT_84280 I 0.714
AMTR_s00074p00097250 Amborella trichopoda AMTR_s00074p00097250 I 0.709
AT1G70000 Arabidopsis thaliana AT1G70000 I 0.709
fgenesh2_kg.2__1257__AT1G70000.1 Arabidopsis lyrata fgenesh2_kg.2__1257__AT1G70000.1 I 0.709
GLYMA01G04530 Glycine max GLYMA01G04530 I 0.709
GLYMA02G03020 Glycine max GLYMA02G03020 I 0.709
SELMODRAFT_439294 Selaginella moellendorffii SELMODRAFT_439294 I 0.709
SELMODRAFT_445372 Selaginella moellendorffii SELMODRAFT_445372 I 0.709
TCM_010118 Theobroma cacao TCM_010118 I 0.709
VIT_01s0026g01050 Vitis vinifera VIT_01s0026g01050 I 0.709
Cla000916 Citrullus lanatus Cla000916 I 0.709
29736.m002089 Ricinus communis 29736.m002089 I 0.709
cassava22868.valid.m1 Manihot esculenta cassava22868.valid.m1 I 0.709
Cucsa.361050 Cucumis sativus Cucsa.361050 I 0.709
estExt_fgenesh1_pg.C_1880060 Physcomitrella patens estExt_fgenesh1_pg.C_1880060 I 0.709
fgenesh1_pg.scaffold_66000046 Physcomitrella patens fgenesh1_pg.scaffold_66000046 I 0.709
fgenesh1_pg.scaffold_66000048 Physcomitrella patens fgenesh1_pg.scaffold_66000048 I 0.709
fgenesh1_pg.scaffold_70000111 Physcomitrella patens fgenesh1_pg.scaffold_70000111 D 0.709
gw1.89.65.1 Physcomitrella patens gw1.89.65.1 I 0.709
Aquca_002_00384 Aquilegia coerulea Aquca_002_00384 I 0.709
Bostr.10273s0355 Boechera stricta Bostr.10273s0355 I 0.709
Ciclev10032167m.g Citrus clementina Ciclev10032167m.g I 0.709
Eucgr.B00377 Eucalyptus grandis Eucgr.B00377 I 0.709
Eucgr.B02575 Eucalyptus grandis Eucgr.B02575 I 0.709
Eucgr.K02897 Eucalyptus grandis Eucgr.K02897 I 0.709
Lus10013289.g Linum usitatissimum Lus10013289.g I 0.709
orange1.1g021351m.g Citrus sinensis orange1.1g021351m.g I 0.709
Thhalv10019007m.g Eutrema salsugineum Thhalv10019007m.g I 0.709
MDP0000140324 Malus domestica MDP0000140324 I 0.707
MDP0000149809 Malus domestica MDP0000149809 I 0.707
MDP0000199437 Malus domestica MDP0000199437 I 0.707
PGSC0003DMG400024572 Solanum tuberosum PGSC0003DMG400024572 I 0.706
Sb03g006450 Sorghum bicolor Sb03g006450 I 0.706
evm.TU.supercontig_13.246 Carica papaya evm.TU.supercontig_13.246 I 0.706
evm.TU.supercontig_13.248 Carica papaya evm.TU.supercontig_13.248 I 0.706
evm.TU.supercontig_35.12 Carica papaya evm.TU.supercontig_35.12 I 0.706
Lus10004248.g Linum usitatissimum Lus10004248.g I 0.706
Ciclev10030461m.g Citrus clementina Ciclev10030461m.g I 0.704
PGSC0003DMG400036212 Solanum tuberosum PGSC0003DMG400036212 I 0.703
BGIOSGA017461 Oryza indica BGIOSGA017461 I 0.702
OB05G35300 Oryza brachyantha OB05G35300 I 0.702
OBART05G27750 Oryza barthii OBART05G27750 I 0.702
OGLUM05G29240 Oryza glumaepatula OGLUM05G29240 I 0.702
OMERI05G23670 Oryza meridionalis OMERI05G23670 I 0.702
ONIVA05G29740 Oryza nivara ONIVA05G29740 I 0.702
OPUNC05G25370 Oryza punctata OPUNC05G25370 I 0.702
OPUNC05G25400 Oryza punctata OPUNC05G25400 I 0.702
ORGLA05G0241200 Oryza glaberrima ORGLA05G0241200 I 0.702
ORUFI05G29720 Oryza rufipogon ORUFI05G29720 I 0.702
OS05G0589400 Oryza sativa OS05G0589400 I 0.702
e_gw1.89.66.1 Physcomitrella patens e_gw1.89.66.1 I 0.699
Cagra.10840s0008 Capsella grandiflora Cagra.10840s0008 I 0.699
Carubv10020813m.g Capsella rubella Carubv10020813m.g I 0.699
F775_11223 Aegilops tauschii F775_11223 I 0.698
Traes_3AS_965E2F790 Triticum aestivum Traes_3AS_965E2F790 I 0.698
TRAES3BF186800050CFD_g Triticum aestivum TRAES3BF186800050CFD_g I 0.698
Traes_3DS_61692C8F3 Triticum aestivum Traes_3DS_61692C8F3 I 0.698
TRIUR3_12855 Triticum urartu TRIUR3_12855 I 0.698
estExt_fgenesh1_pg.C_60110 Micromonas pusilla estExt_fgenesh1_pg.C_60110 I 0.698
EuGene.0300010169 Micromonas sp RCC299 EuGene.0300010169 I 0.698
GLYMA04G34720 Glycine max GLYMA04G34720 I 0.696
GLYMA06G19960 Glycine max GLYMA06G19960 I 0.696
MTR_4g107230 Medicago truncatula MTR_4g107230 I 0.696
Cucsa.395160 Cucumis sativus Cucsa.395160 I 0.696
MDP0000758053 Malus domestica MDP0000758053 I 0.696
SapurV1A.1685s0020 Salix purpurea SapurV1A.1685s0020 I 0.695
GLYMA10G23084 Glycine max GLYMA10G23084 N 0.693
MDP0000938309 Malus domestica MDP0000938309 I 0.693
BGIOSGA003928 Oryza indica BGIOSGA003928 I 0.692
BGIOSGA003931 Oryza indica BGIOSGA003931 I 0.692
F775_32973 Aegilops tauschii F775_32973 I 0.692
LPERR01G18690 Leersia perrieri LPERR01G18690 I 0.692
MLOC_7981 Hordeum vulgare MLOC_7981 I 0.692
OB01G31400 Oryza brachyantha OB01G31400 I 0.692
OBART01G21920 Oryza barthii OBART01G21920 I 0.692
OGLUM01G25620 Oryza glumaepatula OGLUM01G25620 I 0.692
OLONG_007893 Oryza longistaminata OLONG_007893 I 0.692
OMERI01G20200 Oryza meridionalis OMERI01G20200 I 0.692
ONIVA01G25110 Oryza nivara ONIVA01G25110 I 0.692
OPUNC01G22110 Oryza punctata OPUNC01G22110 I 0.692
ORGLA01G0174500 Oryza glaberrima ORGLA01G0174500 I 0.692
ORUFI01G24630 Oryza rufipogon ORUFI01G24630 I 0.692
OS01G0603300 Oryza sativa OS01G0603300 I 0.692
Traes_3AL_55A3F252C Triticum aestivum Traes_3AL_55A3F252C I 0.692
TRAES3BF053400010CFD_g Triticum aestivum TRAES3BF053400010CFD_g I 0.692
Traes_3DL_F1DB969A8 Triticum aestivum Traes_3DL_F1DB969A8 I 0.692
PGSC0003DMG400034640 Solanum tuberosum PGSC0003DMG400034640 N 0.690
AT3G16350 Arabidopsis thaliana AT3G16350 D 0.688
Bo5g126180 Brassica oleracea Bo5g126180 I 0.688
Bra027170 Brassica rapa Bra027170 I 0.688
fgenesh2_kg.3__1788__AT3G16350.1 Arabidopsis lyrata fgenesh2_kg.3__1788__AT3G16350.1 I 0.688
POPTR_0001s22660 Populus trichocarpa POPTR_0001s22660 I 0.688
Bostr.28625s0055 Boechera stricta Bostr.28625s0055 I 0.688
Cagra.6624s0006 Capsella grandiflora Cagra.6624s0006 I 0.688
Carubv10013924m.g Capsella rubella Carubv10013924m.g I 0.688
Thhalv10020915m.g Eutrema salsugineum Thhalv10020915m.g I 0.688
GLYMA13G43120 Glycine max GLYMA13G43120 I 0.687
GLYMA15G02250 Glycine max GLYMA15G02250 I 0.687
MLOC_79329 Hordeum vulgare MLOC_79329 I 0.687
MTR_2g100930 Medicago truncatula MTR_2g100930 I 0.687
TCM_028884 Theobroma cacao TCM_028884 I 0.687
Ca_02786 Cicer arietinum Ca_02786 I 0.687
Cucsa.285620 Cucumis sativus Cucsa.285620 I 0.687
Aquca_001_00262 Aquilegia coerulea Aquca_001_00262 I 0.687
Gorai.009G137300 Gossypium raimondii Gorai.009G137300 I 0.687
GSMUA_Achr1G01650_001 Musa acuminata GSMUA_Achr1G01650_001 I 0.686
Gorai.007G371900 Gossypium raimondii Gorai.007G371900 I 0.686
Aquca_004_00370 Aquilegia coerulea Aquca_004_00370 I 0.685
BRADI2G42870 Brachypodium distachyon BRADI2G42870 I 0.681
VIT_18s0001g01170 Vitis vinifera VIT_18s0001g01170 I 0.681
evm.TU.supercontig_13.247 Carica papaya evm.TU.supercontig_13.247 I 0.681
AT1G19000 Arabidopsis thaliana AT1G19000 D 0.680
fgenesh2_kg.1__2077__AT1G19000.2 Arabidopsis lyrata fgenesh2_kg.1__2077__AT1G19000.2 I 0.680
POPTR_0001s19070 Populus trichocarpa POPTR_0001s19070 I 0.680
Cagra.1961s0096 Capsella grandiflora Cagra.1961s0096 I 0.680
Carubv10011841m.g Capsella rubella Carubv10011841m.g I 0.680
SapurV1A.0002s0030 Salix purpurea SapurV1A.0002s0030 I 0.680
SapurV1A.0408s0140 Salix purpurea SapurV1A.0408s0140 I 0.680
PRUPE_ppa008539mg Prunus persica PRUPE_ppa008539mg I 0.678
TCM_014838 Theobroma cacao TCM_014838 I 0.678
Pm006358 Prunus mume Pm006358 I 0.678
30146.m003509 Ricinus communis 30146.m003509 I 0.678
cassava22335.valid.m1 Manihot esculenta cassava22335.valid.m1 I 0.678
cassava31470.valid.m1 Manihot esculenta cassava31470.valid.m1 I 0.678
mgf012785m Mimulus guttatus mgf012785m I 0.678
Ciclev10025950m.g Citrus clementina Ciclev10025950m.g I 0.678
Eucgr.J02939 Eucalyptus grandis Eucgr.J02939 I 0.678
gene00738-v1.0-hybrid Fragaria vesca gene00738-v1.0-hybrid I 0.678
Lus10006826.g Linum usitatissimum Lus10006826.g I 0.678
Lus10025822.g Linum usitatissimum Lus10025822.g I 0.678
Lus10037560.g Linum usitatissimum Lus10037560.g I 0.678
Lus10038279.g Linum usitatissimum Lus10038279.g I 0.678
orange1.1g016477m.g Citrus sinensis orange1.1g016477m.g I 0.678
PK29550.1 Cannabis sativa PK29550.1 D 0.678
PGSC0003DMG400026442 Solanum tuberosum PGSC0003DMG400026442 I 0.676
Solyc12g044610.1 Solanum lycopersicum Solyc12g044610.1 I 0.676
Traes_7DS_C6BEE3896 Triticum aestivum Traes_7DS_C6BEE3896 I 0.676
TRIUR3_30912 Triticum urartu TRIUR3_30912 I 0.676
BGIOSGA015321 Oryza indica BGIOSGA015321 I 0.675
ONIVA04G06580 Oryza nivara ONIVA04G06580 I 0.675
SapurV1A.0138s0010 Salix purpurea SapurV1A.0138s0010 I 0.671
SapurV1A.1673s0010 Salix purpurea SapurV1A.1673s0010 I 0.671
PGSC0003DMG400018620 Solanum tuberosum PGSC0003DMG400018620 N 0.669
OB05G15660 Oryza brachyantha OB05G15660 I 0.668
MTR_5g037080 Medicago truncatula MTR_5g037080 I 0.667
Cla019445 Citrullus lanatus Cla019445 I 0.667
cassava4591.m1 Manihot esculenta cassava4591.m1 I 0.667
Cucsa.197320 Cucumis sativus Cucsa.197320 I 0.667
LjSGA_030087.1 Lotus japonicus LjSGA_030087.1 I 0.666
mgf002714m Mimulus guttatus mgf002714m I 0.664
Thhalv10005259m.g Eutrema salsugineum Thhalv10005259m.g I 0.663