scaffold_401530.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 scaffold_401530.1 T279386_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_401530.1 Myb 37 79

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0136_3 Arabidopsis lyrata Al_scaffold_0136_3 N 0.887
Cagra.0567s0009 Capsella grandiflora Cagra.0567s0009 N 0.887
Carubv10025583m.g Capsella rubella Carubv10025583m.g N 0.879
Bostr.24513s0196 Boechera stricta Bostr.24513s0196 N 0.858
Carubv10024393m.g Capsella rubella Carubv10024393m.g N 0.829
Carubv10024964m.g Capsella rubella Carubv10024964m.g N 0.799
TCL1 Arabidopsis thaliana AT2G30432 N 0.795
TCL1 Arabidopsis lyrata fgenesh2_kg.4__1015__AT2G30432.1 N 0.795
ETC2 Arabidopsis thaliana AT2G30420 N 0.794
TCL2 Arabidopsis thaliana AT2G30424 N 0.786
TCL2 Arabidopsis lyrata scaffold_401531.1 N 0.786
Lus10005949.g Linum usitatissimum Lus10005949.g N 0.782
Bostr.24513s0195 Boechera stricta Bostr.24513s0195 N 0.778
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N 0.775
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N 0.753
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N 0.753
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N 0.753
MTR_5g009460 Medicago truncatula MTR_5g009460 N 0.747
TCM_005177 Theobroma cacao TCM_005177 N 0.747
Ca_15029 Cicer arietinum Ca_15029 N 0.747
Cla011563 Citrullus lanatus Cla011563 N 0.747
cassava32987.m1 Manihot esculenta cassava32987.m1 N 0.747
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N 0.747
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N 0.747
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N 0.747
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N 0.747
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N 0.746
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N 0.743
Bo9g110930 Brassica oleracea Bo9g110930 N 0.739
Thhalv10017480m.g Eutrema salsugineum Thhalv10017480m.g N 0.735
GLYMA01G43435 Glycine max GLYMA01G43435 N 0.732
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N 0.732
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N 0.732
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N 0.727
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N 0.726
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N 0.724
Pm018400 Prunus mume Pm018400 N 0.724
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N 0.724
MDP0000141474 Malus domestica MDP0000141474 N 0.724
MDP0000583070 Malus domestica MDP0000583070 N 0.724
GLYMA11G02061 Glycine max GLYMA11G02061 N 0.720
Bra026297 Brassica rapa Bra026297 N 0.719
TRY Arabidopsis thaliana AT5G53200 N 0.717
Bo3g022870 Brassica oleracea Bo3g022870 N 0.717
TRY Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001350 N 0.717
Bostr.26833s0960 Boechera stricta Bostr.26833s0960 N 0.717
Cagra.0084s0067 Capsella grandiflora Cagra.0084s0067 N 0.717
Carubv10027412m.g Capsella rubella Carubv10027412m.g N 0.717
Thhalv10015741m.g Eutrema salsugineum Thhalv10015741m.g N 0.717
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N 0.714
cassava46504.m1 Manihot esculenta cassava46504.m1 N 0.713
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N 0.712
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N 0.711
TCM_016428 Theobroma cacao TCM_016428 N 0.708
ETC3 Arabidopsis thaliana AT4G01060 N 0.701
29742.m001447 Ricinus communis 29742.m001447 N 0.701
Bo2g098940 Brassica oleracea Bo2g098940 N 0.695
Bra008539 Brassica rapa Bra008539 N 0.695
ETC3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002892 N 0.695
Bostr.7365s0058 Boechera stricta Bostr.7365s0058 N 0.695
Cagra.1372s0017 Capsella grandiflora Cagra.1372s0017 N 0.695
Carubv10003403m.g Capsella rubella Carubv10003403m.g N 0.695
Aquca_037_00095 Aquilegia coerulea Aquca_037_00095 N 0.694
GSMUA_Achr8G19880_001 Musa acuminata GSMUA_Achr8G19880_001 N 0.693
GSMUA_AchrUn_randomG19730_001 Musa acuminata GSMUA_AchrUn_randomG19730_001 N 0.693
Cucsa.201970 Cucumis sativus Cucsa.201970 N 0.690
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N 0.686
TCM_015351 Theobroma cacao TCM_015351 N 0.686
Aquca_013_00134 Aquilegia coerulea Aquca_013_00134 N 0.677
Eucgr.D02360 Eucalyptus grandis Eucgr.D02360 N 0.677
Bo3g024610 Brassica oleracea Bo3g024610 N 0.674
Bo3g054440 Brassica oleracea Bo3g054440 N 0.673
Bra000941 Brassica rapa Bra000941 N 0.673
Thhalv10029104m.g Eutrema salsugineum Thhalv10029104m.g N 0.673
Bo2g046050 Brassica oleracea Bo2g046050 N 0.672
Bra022637 Brassica rapa Bra022637 N 0.668
Eucgr.K00332 Eucalyptus grandis Eucgr.K00332 N 0.668
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N 0.664
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N 0.664
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N 0.664
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N 0.664
Lus10038822.g Linum usitatissimum Lus10038822.g N 0.662