e_gw1.42.55.1 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 e_gw1.42.55.1 T284626_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARR1
M02297_2.00 		Arabidopsis thaliana
NAAGATHCKN
NMGDATCTTN		 PBM
Weirauch et al.(2014)
pTH8590 		0.775 0.851
ARR1
M02296_2.00 		Arabidopsis thaliana
NDGATHYBNN
NNVRDATCHN		 PBM
Weirauch et al.(2014)
pTH8257 		0.760 0.830
ARR14
M00873_2.00 		Arabidopsis thaliana
NNAGATHCKS
SMGDATCTNN		 PBM
Franco-Zorrilla et al.(2014)
ARR14 		0.677 0.787
ARR14
M02293_2.00 		Arabidopsis thaliana
NAGATHYBNN
NNVRDATCTN		 PBM
Weirauch et al.(2014)
pTH7531 		0.677 0.787
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.42.55.1 Myb 188 238

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.31.134.1 Physcomitrella patens gw1.31.134.1 I 0.875
OSTLU_26838 Ostreococcus lucimarinus OSTLU_26838 I 0.778
estExt_Genewise1.C_90203 Chlorella NC64A estExt_Genewise1.C_90203 I 0.778
Bo1g055180 Brassica oleracea Bo1g055180 I 0.775
Bo7g104190 Brassica oleracea Bo7g104190 I 0.775
Bra012743 Brassica rapa Bra012743 I 0.775
Bra033527 Brassica rapa Bra033527 I 0.775
GSMUA_Achr9G16610_001 Musa acuminata GSMUA_Achr9G16610_001 I 0.775
ARR2 Arabidopsis lyrata scaffold_702902.1 I 0.775
Bostr.30275s0051 Boechera stricta Bostr.30275s0051 I 0.775
Cagra.0053s0018 Capsella grandiflora Cagra.0053s0018 I 0.775
Carubv10007581m.g Capsella rubella Carubv10007581m.g I 0.775
Lus10016846.g Linum usitatissimum Lus10016846.g I 0.775
Lus10037719.g Linum usitatissimum Lus10037719.g I 0.775
Thhalv10024686m.g Eutrema salsugineum Thhalv10024686m.g I 0.775
Bostr.0556s0001 Boechera stricta Bostr.0556s0001 I 0.766
ARR1 Arabidopsis thaliana AT3G16857 D 0.760
Bo3g068550 Brassica oleracea Bo3g068550 I 0.760
Bo5g123620 Brassica oleracea Bo5g123620 I 0.760
Bra001643 Brassica rapa Bra001643 I 0.760
Bra022183 Brassica rapa Bra022183 I 0.760
Bostr.28625s0008 Boechera stricta Bostr.28625s0008 I 0.760
Cagra.5497s0018 Capsella grandiflora Cagra.5497s0018 I 0.760
Carubv10013107m.g Capsella rubella Carubv10013107m.g I 0.760
1200010147 Ostreococcus tauri 1200010147 I 0.757
Ciclev10007648m.g Citrus clementina Ciclev10007648m.g I 0.743
orange1.1g005719m.g Citrus sinensis orange1.1g005719m.g I 0.743
Lus10040780.g Linum usitatissimum Lus10040780.g I 0.735
gw1.12.455.1 Ostreococcus RCC809 gw1.12.455.1 I 0.729
PDK_20s1887621g001 Phoenix dactylifera PDK_20s1887621g001 I 0.725
SELMODRAFT_447635 Selaginella moellendorffii SELMODRAFT_447635 I 0.711
Thhalv10020213m.g Eutrema salsugineum Thhalv10020213m.g I 0.707
Ca_09080 Cicer arietinum Ca_09080 I 0.705
29848.m004559 Ricinus communis 29848.m004559 I 0.705
Lus10005340.g Linum usitatissimum Lus10005340.g I 0.705
Lus10041020.g Linum usitatissimum Lus10041020.g I 0.705
Bo1g123000 Brassica oleracea Bo1g123000 I 0.696
PDK_20s13009426g002 Phoenix dactylifera PDK_20s13009426g002 I 0.691
AMTR_s00057p00108840 Amborella trichopoda AMTR_s00057p00108840 I 0.689
EuGene.0000130210 Micromonas pusilla EuGene.0000130210 I 0.689
GLYMA07G37220 Glycine max GLYMA07G37220 I 0.686
GLYMA17G03380 Glycine max GLYMA17G03380 I 0.686
MTR_4g121020 Medicago truncatula MTR_4g121020 I 0.686
PGSC0003DMG400023534 Solanum tuberosum PGSC0003DMG400023534 I 0.686
PGSC0003DMG401025624 Solanum tuberosum PGSC0003DMG401025624 I 0.686
POPTR_0008s22990 Populus trichocarpa POPTR_0008s22990 I 0.686
POPTR_0010s00320 Populus trichocarpa POPTR_0010s00320 I 0.686
PRUPE_ppa002408mg Prunus persica PRUPE_ppa002408mg I 0.686
SELMODRAFT_173793 Selaginella moellendorffii SELMODRAFT_173793 I 0.686
SELMODRAFT_450181 Selaginella moellendorffii SELMODRAFT_450181 I 0.686
Solyc01g065540.2 Solanum lycopersicum Solyc01g065540.2 I 0.686
Solyc05g054390.2 Solanum lycopersicum Solyc05g054390.2 I 0.686
TCM_021300 Theobroma cacao TCM_021300 I 0.686
VIT_05s0077g01480 Vitis vinifera VIT_05s0077g01480 I 0.686
Ca_02989 Cicer arietinum Ca_02989 I 0.686
Cla009424 Citrullus lanatus Cla009424 I 0.686
Cla022101 Citrullus lanatus Cla022101 I 0.686
29889.m003245 Ricinus communis 29889.m003245 I 0.686
cassava43032.valid.m1 Manihot esculenta cassava43032.valid.m1 I 0.686
Cucsa.252760 Cucumis sativus Cucsa.252760 I 0.686
Aquca_003_00615 Aquilegia coerulea Aquca_003_00615 I 0.686
Ciclev10004470m.g Citrus clementina Ciclev10004470m.g I 0.686
Ciclev10004989m.g Citrus clementina Ciclev10004989m.g I 0.686
Eucgr.A00189 Eucalyptus grandis Eucgr.A00189 I 0.686
evm.TU.supercontig_9.105 Carica papaya evm.TU.supercontig_9.105 I 0.686
Gorai.002G029200 Gossypium raimondii Gorai.002G029200 I 0.686
Gorai.011G196400 Gossypium raimondii Gorai.011G196400 I 0.686
MDP0000224740 Malus domestica MDP0000224740 I 0.686
MDP0000290818 Malus domestica MDP0000290818 I 0.686
PK26059.1 Cannabis sativa PK26059.1 I 0.686
GLYMA15G15520 Glycine max GLYMA15G15520 I 0.680
AMTR_s00086p00182350 Amborella trichopoda AMTR_s00086p00182350 I 0.679
AMTR_s00176p00045260 Amborella trichopoda AMTR_s00176p00045260 I 0.679
RR21 Oryza indica BGIOSGA012149 I 0.679
BRADI1G69480 Brachypodium distachyon BRADI1G69480 I 0.679
F775_32153 Aegilops tauschii F775_32153 I 0.679
GLYMA02G09451 Glycine max GLYMA02G09451 I 0.679
GLYMA07G26890 Glycine max GLYMA07G26890 I 0.679
GRMZM2G099797 Zea mays GRMZM2G099797 I 0.679
GRMZM2G126834 Zea mays GRMZM2G126834 I 0.679
GSMUA_Achr1G22230_001 Musa acuminata GSMUA_Achr1G22230_001 I 0.679
GSMUA_Achr8G30850_001 Musa acuminata GSMUA_Achr8G30850_001 I 0.679
LPERR03G08040 Leersia perrieri LPERR03G08040 I 0.679
MTR_1g032570 Medicago truncatula MTR_1g032570 I 0.679
OB03G19140 Oryza brachyantha OB03G19140 I 0.679
OBART03G08950 Oryza barthii OBART03G08950 I 0.679
OGLUM03G09080 Oryza glumaepatula OGLUM03G09080 I 0.679
OLONG_002370 Oryza longistaminata OLONG_002370 I 0.679
OMERI03G08390 Oryza meridionalis OMERI03G08390 I 0.679
ONIVA06G01160 Oryza nivara ONIVA06G01160 I 0.679
OPUNC03G08640 Oryza punctata OPUNC03G08640 I 0.679
ORGLA03G0086800 Oryza glaberrima ORGLA03G0086800 I 0.679
ORUFI03G09090 Oryza rufipogon ORUFI03G09090 I 0.679
RR21 Oryza sativa OS03G0224200 I 0.679
PGSC0003DMG400029514 Solanum tuberosum PGSC0003DMG400029514 I 0.679
POPTR_0008s13490 Populus trichocarpa POPTR_0008s13490 I 0.679
POPTR_0010s11600 Populus trichocarpa POPTR_0010s11600 I 0.679
Sb01g042400 Sorghum bicolor Sb01g042400 I 0.679
Si034517m.g Setaria italica Si034517m.g I 0.679
Solyc04g008050.2 Solanum lycopersicum Solyc04g008050.2 I 0.679
TCM_011067 Theobroma cacao TCM_011067 I 0.679
Traes_4AS_6486B493A Triticum aestivum Traes_4AS_6486B493A I 0.679
Traes_4BL_941E7DE4D Triticum aestivum Traes_4BL_941E7DE4D I 0.679
Traes_4DL_2527CA8BF Triticum aestivum Traes_4DL_2527CA8BF I 0.679
TRIUR3_25342 Triticum urartu TRIUR3_25342 I 0.679
ARR14 Vitis vinifera VIT_01s0011g05830 I 0.679
Ca_15151 Cicer arietinum Ca_15151 I 0.679
27647.m000179 Ricinus communis 27647.m000179 I 0.679
Aquca_091_00086 Aquilegia coerulea Aquca_091_00086 I 0.679
Ciclev10014527m.g Citrus clementina Ciclev10014527m.g I 0.679
Eucgr.G02094 Eucalyptus grandis Eucgr.G02094 I 0.679
evm.TU.supercontig_2.186 Carica papaya evm.TU.supercontig_2.186 I 0.679
Gorai.005G156900 Gossypium raimondii Gorai.005G156900 I 0.679
MDP0000124301 Malus domestica MDP0000124301 I 0.679
MDP0000155328 Malus domestica MDP0000155328 I 0.679
orange1.1g005938m.g Citrus sinensis orange1.1g005938m.g I 0.679
Pavir.Ia04946 Panicum virgatum Pavir.Ia04946 I 0.679
Pavir.Ib00921 Panicum virgatum Pavir.Ib00921 I 0.679
SapurV1A.0015s0530 Salix purpurea SapurV1A.0015s0530 I 0.679
SapurV1A.0055s0320 Salix purpurea SapurV1A.0055s0320 I 0.679
ARR14 Arabidopsis thaliana AT2G01760 D 0.677
PRUPE_ppa002493mg Prunus persica PRUPE_ppa002493mg I 0.677
ARR14 Arabidopsis lyrata scaffold_500093.1 I 0.677
Pm005877 Prunus mume Pm005877 I 0.677
mgf010113m Mimulus guttatus mgf010113m I 0.677
mgf012203m Mimulus guttatus mgf012203m I 0.677
Cagra.2235s0034 Capsella grandiflora Cagra.2235s0034 I 0.677
Carubv10018465m.g Capsella rubella Carubv10018465m.g I 0.677
PDK_20s13009423g003 Phoenix dactylifera PDK_20s13009423g003 I 0.676
SELMODRAFT_444702 Selaginella moellendorffii SELMODRAFT_444702 I 0.672
ARR1 Arabidopsis lyrata fgenesh2_kg.3__1853__AT3G16857.2 I 0.671
e_gw1.1.649.1 Ostreococcus RCC809 e_gw1.1.649.1 I 0.671
Gorai.006G259700 Gossypium raimondii Gorai.006G259700 I 0.671
Ca_14780 Cicer arietinum Ca_14780 I 0.670
gene05178-v1.0-hybrid Fragaria vesca gene05178-v1.0-hybrid I 0.666
Thhalv10004402m.g Eutrema salsugineum Thhalv10004402m.g I 0.663
gw1.15.242.1 Coccomyxa subellipsoidea C169 gw1.15.242.1 I 0.662
fgeneshCV_pg.C_scaffold_15000185 Chlorella vulgaris fgeneshCV_pg.C_scaffold_15000185 I 0.662