gw1.18.142.1 (Volvox carteri)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gw1.18.142.1 T285071_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.691 0.699
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.691 0.699
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.691 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.18.142.1 Myb 4 50
gw1.18.142.1 Myb 56 101

Links

Other Myb/SANT family TFs
Other Volvox carteri TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CHLREDRAFT_116056 Chlamydomonas reinhardtii CHLREDRAFT_116056 I 0.866
estExt_fgenesh4_pg.C_10375 Volvox carteri estExt_fgenesh4_pg.C_10375 I 0.764
Bo2g167960 Brassica oleracea Bo2g167960 I 0.700
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.699
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.694
Cla022947 Citrullus lanatus Cla022947 I 0.692
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.692
MYB44 Arabidopsis thaliana AT5G67300 D 0.691
Bo7g063830 Brassica oleracea Bo7g063830 I 0.691
Bra012149 Brassica rapa Bra012149 I 0.691
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.691
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.691
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.691
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I 0.686
29814.m000736 Ricinus communis 29814.m000736 I 0.682
GLYMA06G04010 Glycine max GLYMA06G04010 I 0.681
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.679
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.677
Cla004431 Citrullus lanatus Cla004431 I 0.676
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.674
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.674
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.674
TCM_042474 Theobroma cacao TCM_042474 I 0.672
CHLREDRAFT_116461 Chlamydomonas reinhardtii CHLREDRAFT_116461 N 0.671
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.671
mgf020432m Mimulus guttatus mgf020432m I 0.670
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I 0.670
GLYMA17G36370 Glycine max GLYMA17G36370 I 0.669
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.669
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.669
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.669
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.668
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I 0.667
Ca_01522 Cicer arietinum Ca_01522 I 0.664
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.664
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.663
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.662
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.662
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.662
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.662
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.662
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.662
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.662