Carubv10012426m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10012426m.g T286316_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012426m Myb 494 544

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0824s0115 Capsella grandiflora Cagra.0824s0115 N 0.909
Bostr.7128s0357 Boechera stricta Bostr.7128s0357 N 0.875
TRFL3 Arabidopsis lyrata fgenesh2_kg.1__1907__AT1G17460.1 N 0.825
Thhalv10007199m.g Eutrema salsugineum Thhalv10007199m.g N 0.811
BRADI3G57300 Brachypodium distachyon BRADI3G57300 N 0.791
AMTR_s00009p00103030 Amborella trichopoda AMTR_s00009p00103030 N 0.788
Cucsa.360310 Cucumis sativus Cucsa.360310 N 0.773
Thhalv10018282m.g Eutrema salsugineum Thhalv10018282m.g N 0.773
TRFL3 Arabidopsis thaliana AT1G17460 N 0.757
TRFL6 Arabidopsis lyrata fgenesh2_kg.2__1530__AT1G72650.2 N 0.755
Bostr.10273s0086 Boechera stricta Bostr.10273s0086 N 0.755
Cagra.1013s0036 Capsella grandiflora Cagra.1013s0036 N 0.755
Carubv10019876m.g Capsella rubella Carubv10019876m.g N 0.755
TRFL6 Arabidopsis thaliana AT1G72650 N 0.746
29638.m000522 Ricinus communis 29638.m000522 N 0.735
Bo5g023810 Brassica oleracea Bo5g023810 N 0.724
GRMZM2G049194 Zea mays GRMZM2G049194 N 0.721
Sb04g034770 Sorghum bicolor Sb04g034770 N 0.721
Si016649m.g Setaria italica Si016649m.g N 0.721
BGIOSGA009134 Oryza indica BGIOSGA009134 N 0.720
LPERR02G28410 Leersia perrieri LPERR02G28410 N 0.720
OB02G41350 Oryza brachyantha OB02G41350 N 0.720
OBART02G34530 Oryza barthii OBART02G34530 N 0.720
OGLUM02G35670 Oryza glumaepatula OGLUM02G35670 N 0.720
ONIVA02G36570 Oryza nivara ONIVA02G36570 N 0.720
ORGLA02G0298600 Oryza glaberrima ORGLA02G0298600 N 0.720
ORUFI02G36040 Oryza rufipogon ORUFI02G36040 N 0.720
OS02G0776700 Oryza sativa OS02G0776700 N 0.720
Bra025973 Brassica rapa Bra025973 N 0.716
F775_05862 Aegilops tauschii F775_05862 N 0.711
MLOC_56874 Hordeum vulgare MLOC_56874 N 0.711
Traes_3AL_B71F3F028 Triticum aestivum Traes_3AL_B71F3F028 N 0.711
TRAES3BF079700090CFD_g Triticum aestivum TRAES3BF079700090CFD_g N 0.711
Traes_3DL_A631E1F0C Triticum aestivum Traes_3DL_A631E1F0C N 0.711
TRIUR3_15439 Triticum urartu TRIUR3_15439 N 0.711
Lus10015664.g Linum usitatissimum Lus10015664.g N 0.710
Lus10037678.g Linum usitatissimum Lus10037678.g N 0.710
Pavir.Aa00316 Panicum virgatum Pavir.Aa00316 N 0.703
Pavir.J06110 Panicum virgatum Pavir.J06110 N 0.703
Bra016044 Brassica rapa Bra016044 N 0.695
PRUPE_ppa003052mg Prunus persica PRUPE_ppa003052mg N 0.686
Pm013286 Prunus mume Pm013286 N 0.686
gene07405-v1.0-hybrid Fragaria vesca gene07405-v1.0-hybrid N 0.686
MDP0000261067 Malus domestica MDP0000261067 N 0.686
MDP0000279204 Malus domestica MDP0000279204 N 0.686
Bo6g091360 Brassica oleracea Bo6g091360 N 0.678
Bra003870 Brassica rapa Bra003870 N 0.678
Bra003871 Brassica rapa Bra003871 N 0.678
Cla015802 Citrullus lanatus Cla015802 N 0.678
GSMUA_Achr5G24660_001 Musa acuminata GSMUA_Achr5G24660_001 N 0.676
TCM_029115 Theobroma cacao TCM_029115 N 0.676
Ciclev10025094m.g Citrus clementina Ciclev10025094m.g N 0.676
Gorai.011G058300 Gossypium raimondii Gorai.011G058300 N 0.676
orange1.1g006062m.g Citrus sinensis orange1.1g006062m.g N 0.676
PK02666.1 Cannabis sativa PK02666.1 N 0.676
Solyc03g121990.2 Solanum lycopersicum Solyc03g121990.2 N 0.665
mgf013194m Mimulus guttatus mgf013194m N 0.663
PDK_20s1327961g002 Phoenix dactylifera PDK_20s1327961g002 N 0.661