gene20912-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene20912-v1.0-hybrid T287351_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.735 0.802
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.735 0.802
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.735 0.802
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna20912.1-v1.0-hybrid Myb 116 161

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.744
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.742
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.740
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.735
Bra034173 Brassica rapa Bra034173 I 0.735
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.732
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.727
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.726
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.726
Pm018878 Prunus mume Pm018878 I 0.726
Bo5g136680 Brassica oleracea Bo5g136680 I 0.725
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.725
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.724
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.722
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.721
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.721
29610.m000410 Ricinus communis 29610.m000410 I 0.721
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.721
Bo1g141120 Brassica oleracea Bo1g141120 I 0.718
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I 0.716
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.715
Bra034853 Brassica rapa Bra034853 I 0.714
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.707
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.707
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.704
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.704
PK15104.1 Cannabis sativa PK15104.1 I 0.702
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.692
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.690
MDP0000277813 Malus domestica MDP0000277813 I 0.687
Ca_12513 Cicer arietinum Ca_12513 I 0.685
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.685
TCM_042604 Theobroma cacao TCM_042604 I 0.683
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I 0.681
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.678
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.678
mgf010347m Mimulus guttatus mgf010347m I 0.676
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I 0.674
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.671
Cla004397 Citrullus lanatus Cla004397 I 0.669
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.668
PGSC0003DMG400020730 Solanum tuberosum PGSC0003DMG400020730 I 0.661