Bra008980 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra008980 T292560_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.875 0.675
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.875 0.675
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra008980.1-P NAC/NAM 18 146

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC050 Arabidopsis thaliana AT3G10480 D 0.883
Eucgr.J01038 Eucalyptus grandis Eucgr.J01038 I 0.877
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I 0.876
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I 0.875
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I 0.875
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I 0.875
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I 0.875
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I 0.875
Carubv10013694m.g Capsella rubella Carubv10013694m.g I 0.875
GLYMA10G34130 Glycine max GLYMA10G34130 I 0.873
GLYMA20G33430 Glycine max GLYMA20G33430 I 0.873
Ca_08371 Cicer arietinum Ca_08371 I 0.873
MTR_1g090720 Medicago truncatula MTR_1g090720 I 0.871