CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra032009
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra032009
T292658_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC045
M07194_2.00
Arabidopsis thaliana
TTNCTTSHNNNDCAMG
CKTGHNNNDSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC045_col_a
0.972
1.000
NAC045
M07195_2.00
Arabidopsis thaliana
TTNCTTSHNNNDCAMG
CKTGHNNNDSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC045_colamp_a
0.972
1.000
PK19314.1
M01291_2.00
Cannabis sativa
NNNNAMDNHW
WDNHKTNNNN
PBM
Lambert et al.(2019)
pTH11252
0.941
0.811
anac057
M07208_2.00
Arabidopsis thaliana
TNCKTGHNNNDCAMGYH
DRCKTGHNNNDCAMGNA
Dap-seq
OMalley et al.(2016)
ANAC057_col_a
0.940
0.811
anac057
M07209_2.00
Arabidopsis thaliana
WNCKTGHNNHDCAMGYHAYCD
HGRTDRCKTGHDNNDCAMGNW
Dap-seq
OMalley et al.(2016)
ANAC057_colamp_a
0.940
0.811
anac028
M01289_2.00
Arabidopsis thaliana
NTTGCGTRH
DYACGCAAN
PBM
Lambert et al.(2019)
pTH9962
0.924
0.802
anac028
M07179_2.00
Arabidopsis thaliana
CTTSHNNHDCAMGYWA
TWRCKTGHDNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC028_col_a
0.924
0.802
PK26618.1
M01292_2.00
Cannabis sativa
NNYAMGHHA
TDDCKTRNN
PBM
Lambert et al.(2019)
pTH11328
0.921
0.820
ANAC020
M07178_2.00
Arabidopsis thaliana
TTNCKTGHNNNDCAMGYHAHY
RDTDRCKTGHNNNDCAMGNAA
Dap-seq
OMalley et al.(2016)
ANAC020_col_v31
0.908
0.730
anac096
M07237_2.00
Arabidopsis thaliana
CTTSHNNNNBAMGHAAYC
GRTTDCKTVNNNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC096_colamp_a
0.872
0.721
anac096
M07238_2.00
Arabidopsis thaliana
TTNCTTSWNNHNYAMG
CKTRNDNNWSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC096_col
0.872
0.721
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra032009.1-P
NAC/NAM
7
133
PPGFRFHPTDEELITYYLKRKINGLEIELEVIAEVDLYKCEPWDLPGKSLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
214 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
anac045
Arabidopsis lyrata
Al_scaffold_0003_260
I
0.972
NAC045
Arabidopsis thaliana
AT3G03200
D
0.972
Bo1g154830
Brassica oleracea
Bo1g154830
I
0.972
Bo5g150170
Brassica oleracea
Bo5g150170
I
0.972
Bra021366
Brassica rapa
Bra021366
I
0.972
Bostr.19046s0031
Boechera stricta
Bostr.19046s0031
I
0.972
Cagra.2098s0066
Capsella grandiflora
Cagra.2098s0066
I
0.972
Carubv10013584m.g
Capsella rubella
Carubv10013584m.g
I
0.972
Thhalv10022055m.g
Eutrema salsugineum
Thhalv10022055m.g
I
0.972
Bo9g161440
Brassica oleracea
Bo9g161440
I
0.966
Cagra.4849s0008
Capsella grandiflora
Cagra.4849s0008
I
0.966
Carubv10003869m.g
Capsella rubella
Carubv10003869m.g
I
0.966
Thhalv10013344m.g
Eutrema salsugineum
Thhalv10013344m.g
I
0.966
anac086
Arabidopsis lyrata
fgenesh2_kg.6__1724__AT5G17260.1
I
0.964
Bostr.2618s0061
Boechera stricta
Bostr.2618s0061
I
0.963
Thhalv10023058m.g
Eutrema salsugineum
Thhalv10023058m.g
I
0.962
Bra006392
Brassica rapa
Bra006392
I
0.957
Bo3g012450
Brassica oleracea
Bo3g012450
I
0.956
NAC086
Arabidopsis thaliana
AT5G17260
I
0.954
anac057
Populus trichocarpa
POPTR_0012s03510
I
0.950
TCM_044911
Theobroma cacao
TCM_044911
I
0.950
anac057
Vitis vinifera
VIT_17s0053g00740
I
0.950
Ciclev10024520m.g
Citrus clementina
Ciclev10024520m.g
I
0.950
MDP0000387787
Malus domestica
MDP0000387787
I
0.950
MDP0000656113
Malus domestica
MDP0000656113
I
0.950
orange1.1g040617m.g
Citrus sinensis
orange1.1g040617m.g
I
0.950
PK03341.1
Cannabis sativa
PK03341.1
I
0.950
GSMUA_Achr9G23940_001
Musa acuminata
GSMUA_Achr9G23940_001
I
0.949
Bra008567
Brassica rapa
Bra008567
I
0.948
GRMZM2G174070
Zea mays
GRMZM2G174070
I
0.948
GRMZM2G406204
Zea mays
GRMZM2G406204
I
0.948
POPTR_0015s05450
Populus trichocarpa
POPTR_0015s05450
I
0.948
Sb01g049240
Sorghum bicolor
Sb01g049240
I
0.948
Si034541m.g
Setaria italica
Si034541m.g
I
0.948
Ca_14390
Cicer arietinum
Ca_14390
I
0.946
GSMUA_Achr3G13880_001
Musa acuminata
GSMUA_Achr3G13880_001
I
0.945
GSMUA_AchrUn_randomG08190_001
Musa acuminata
GSMUA_AchrUn_randomG08190_001
I
0.945
Aquca_002_01357
Aquilegia coerulea
Aquca_002_01357
I
0.945
Gorai.001G070700
Gossypium raimondii
Gorai.001G070700
I
0.945
F775_22879
Aegilops tauschii
F775_22879
I
0.944
MLOC_71128
Hordeum vulgare
MLOC_71128
I
0.944
Traes_4BL_D592DBAAF
Triticum aestivum
Traes_4BL_D592DBAAF
I
0.944
Traes_4DL_A13AE4BE6
Triticum aestivum
Traes_4DL_A13AE4BE6
I
0.944
MDP0000276982
Malus domestica
MDP0000276982
I
0.944
AC233865.1_FG003
Zea mays
AC233865.1_FG003
I
0.943
BGIOSGA031229
Oryza indica
BGIOSGA031229
I
0.943
LPERR09G14740
Leersia perrieri
LPERR09G14740
I
0.943
MTR_5g076850
Medicago truncatula
MTR_5g076850
I
0.943
OGLUM09G19470
Oryza glumaepatula
OGLUM09G19470
I
0.943
OMERI09G14160
Oryza meridionalis
OMERI09G14160
I
0.943
ONIVA09G20110
Oryza nivara
ONIVA09G20110
I
0.943
ORGLA09G0151700
Oryza glaberrima
ORGLA09G0151700
I
0.943
OS09G0552800
Oryza sativa
OS09G0552800
I
0.943
Si033085m.g
Setaria italica
Si033085m.g
I
0.943
Pavir.Bb02627
Panicum virgatum
Pavir.Bb02627
I
0.943
GLYMA11G33210
Glycine max
GLYMA11G33210
I
0.942
OB09G25570
Oryza brachyantha
OB09G25570
I
0.942
PRUPE_ppa002384mg
Prunus persica
PRUPE_ppa002384mg
I
0.942
Sb02g032220
Sorghum bicolor
Sb02g032220
I
0.942
Pm012993
Prunus mume
Pm012993
I
0.942
gene31658-v1.0-hybrid
Fragaria vesca
gene31658-v1.0-hybrid
I
0.942
Gorai.004G048200
Gossypium raimondii
Gorai.004G048200
I
0.942
MDP0000520807
Malus domestica
MDP0000520807
I
0.942
SapurV1A.0202s0410
Salix purpurea
SapurV1A.0202s0410
I
0.942
GLYMA18G05020
Glycine max
GLYMA18G05020
I
0.941
GSMUA_Achr8G13430_001
Musa acuminata
GSMUA_Achr8G13430_001
I
0.941
Ca_13258
Cicer arietinum
Ca_13258
I
0.941
Ciclev10011293m.g
Citrus clementina
Ciclev10011293m.g
I
0.941
orange1.1g007938m.g
Citrus sinensis
orange1.1g007938m.g
I
0.941
PK19314.1
Cannabis sativa
PK19314.1
D
0.941
anac057
Arabidopsis lyrata
Al_scaffold_0003_1866
I
0.940
anac057
Arabidopsis thaliana
AT3G17730
D
0.940
Bo5g122710
Brassica oleracea
Bo5g122710
I
0.940
Bra022236
Brassica rapa
Bra022236
I
0.940
GLYMA02G40750
Glycine max
GLYMA02G40750
I
0.940
GLYMA14G39080
Glycine max
GLYMA14G39080
I
0.940
MTR_3g064580
Medicago truncatula
MTR_3g064580
I
0.940
Bostr.19424s0897
Boechera stricta
Bostr.19424s0897
I
0.940
Carubv10014426m.g
Capsella rubella
Carubv10014426m.g
I
0.940
Thhalv10021408m.g
Eutrema salsugineum
Thhalv10021408m.g
I
0.940
POPTR_0017s02020
Populus trichocarpa
POPTR_0017s02020
I
0.939
TCM_017681
Theobroma cacao
TCM_017681
I
0.939
VIT_04s0079g00280
Vitis vinifera
VIT_04s0079g00280
I
0.939
Cla009281
Citrullus lanatus
Cla009281
I
0.939
30172.m000206
Ricinus communis
30172.m000206
I
0.939
cassava38739.m1
Manihot esculenta
cassava38739.m1
I
0.939
Cucsa.173670
Cucumis sativus
Cucsa.173670
I
0.939
mgf025206m
Mimulus guttatus
mgf025206m
I
0.939
Eucgr.F02910
Eucalyptus grandis
Eucgr.F02910
I
0.939
Gorai.007G188800
Gossypium raimondii
Gorai.007G188800
I
0.939
Gorai.013G146300
Gossypium raimondii
Gorai.013G146300
I
0.939
SapurV1A.0549s0150
Salix purpurea
SapurV1A.0549s0150
I
0.939
PDK_20s1433691g002
Phoenix dactylifera
PDK_20s1433691g002
I
0.939
PGSC0003DMG400031054
Solanum tuberosum
PGSC0003DMG400031054
I
0.938
Solyc03g098190.2
Solanum lycopersicum
Solyc03g098190.2
I
0.938
TCM_033629
Theobroma cacao
TCM_033629
I
0.938
Cla018917
Citrullus lanatus
Cla018917
I
0.938
30171.m000407
Ricinus communis
30171.m000407
I
0.938
cassava4611.m1
Manihot esculenta
cassava4611.m1
I
0.938
Cucsa.112500
Cucumis sativus
Cucsa.112500
I
0.938
mgf009479m
Mimulus guttatus
mgf009479m
I
0.938
evm.TU.supercontig_178.32
Carica papaya
evm.TU.supercontig_178.32
I
0.938
gene09293-v1.0-hybrid
Fragaria vesca
gene09293-v1.0-hybrid
I
0.938
gene19716-v1.0-hybrid
Fragaria vesca
gene19716-v1.0-hybrid
I
0.938
Gorai.006G189600
Gossypium raimondii
Gorai.006G189600
I
0.938
Pavir.Ba01384
Panicum virgatum
Pavir.Ba01384
I
0.938
SapurV1A.0074s0150
Salix purpurea
SapurV1A.0074s0150
I
0.938
SapurV1A.2754s0020
Salix purpurea
SapurV1A.2754s0020
I
0.938
BGIOSGA011734
Oryza indica
BGIOSGA011734
I
0.937
BRADI1G77217
Brachypodium distachyon
BRADI1G77217
I
0.937
LPERR03G01480
Leersia perrieri
LPERR03G01480
I
0.937
OB03G11530
Oryza brachyantha
OB03G11530
I
0.937
OBART03G01580
Oryza barthii
OBART03G01580
I
0.937
OGLUM03G01540
Oryza glumaepatula
OGLUM03G01540
I
0.937
OLONG_013792
Oryza longistaminata
OLONG_013792
I
0.937
OMERI03G01540
Oryza meridionalis
OMERI03G01540
I
0.937
ONIVA09G11670
Oryza nivara
ONIVA09G11670
I
0.937
OPUNC03G01460
Oryza punctata
OPUNC03G01460
I
0.937
ORGLA03G0013500
Oryza glaberrima
ORGLA03G0013500
I
0.937
ORUFI03G01320
Oryza rufipogon
ORUFI03G01320
I
0.937
OS03G0119966
Oryza sativa
OS03G0119966
I
0.937
cassava30278.valid.m1
Manihot esculenta
cassava30278.valid.m1
I
0.937
Lus10026373.g
Linum usitatissimum
Lus10026373.g
I
0.937
Lus10042284.g
Linum usitatissimum
Lus10042284.g
I
0.937
GLYMA09G29760
Glycine max
GLYMA09G29760
I
0.936
GLYMA16G34310
Glycine max
GLYMA16G34310
I
0.936
GSMUA_Achr1G02820_001
Musa acuminata
GSMUA_Achr1G02820_001
I
0.936
POPTR_0004s07910
Populus trichocarpa
POPTR_0004s07910
I
0.936
Ca_18034
Cicer arietinum
Ca_18034
I
0.936
Lus10010959.g
Linum usitatissimum
Lus10010959.g
I
0.936
Lus10020794.g
Linum usitatissimum
Lus10020794.g
I
0.936
Aquca_002_01358
Aquilegia coerulea
Aquca_002_01358
I
0.935
Lus10007377.g
Linum usitatissimum
Lus10007377.g
I
0.935
Pavir.Ia04558
Panicum virgatum
Pavir.Ia04558
I
0.935
Pavir.Ib00051
Panicum virgatum
Pavir.Ib00051
I
0.935
SapurV1A.0149s0500
Salix purpurea
SapurV1A.0149s0500
I
0.935
Solyc02g081270.2
Solanum lycopersicum
Solyc02g081270.2
I
0.934
SapurV1A.0147s0010
Salix purpurea
SapurV1A.0147s0010
I
0.933
SapurV1A.1584s0060
Salix purpurea
SapurV1A.1584s0060
I
0.933
PGSC0003DMG400021474
Solanum tuberosum
PGSC0003DMG400021474
I
0.931
Solyc02g036430.1
Solanum lycopersicum
Solyc02g036430.1
I
0.931
AMTR_s00044p00058960
Amborella trichopoda
AMTR_s00044p00058960
I
0.930
Cla013653
Citrullus lanatus
Cla013653
I
0.930
Cucsa.118620
Cucumis sativus
Cucsa.118620
I
0.930
Gorai.004G268400
Gossypium raimondii
Gorai.004G268400
I
0.929
AMTR_s00037p00144010
Amborella trichopoda
AMTR_s00037p00144010
I
0.925
MTR_6g477900
Medicago truncatula
MTR_6g477900
I
0.925
anac028
Arabidopsis lyrata
Al_scaffold_0002_1137
I
0.924
anac028
Arabidopsis thaliana
AT1G65910
D
0.924
Ca_23537
Cicer arietinum
Ca_23537
I
0.924
MDP0000199840
Malus domestica
MDP0000199840
I
0.924
MDP0000204582
Malus domestica
MDP0000204582
I
0.924
Eucgr.H00614
Eucalyptus grandis
Eucgr.H00614
I
0.923
Bo2g052630
Brassica oleracea
Bo2g052630
I
0.922
Bra039745
Brassica rapa
Bra039745
I
0.922
GLYMA08G17351
Glycine max
GLYMA08G17351
I
0.922
Pm010926
Prunus mume
Pm010926
I
0.922
Bostr.26959s0323
Boechera stricta
Bostr.26959s0323
I
0.922
Cagra.11446s0003
Capsella grandiflora
Cagra.11446s0003
I
0.922
Carubv10021788m.g
Capsella rubella
Carubv10021788m.g
I
0.922
Thhalv10018275m.g
Eutrema salsugineum
Thhalv10018275m.g
I
0.922
PK26618.1
Cannabis sativa
PK26618.1
D
0.921
MTR_2g064090
Medicago truncatula
MTR_2g064090
I
0.920
GLYMA15G41825
Glycine max
GLYMA15G41825
I
0.919
ANAC020
Populus trichocarpa
POPTR_0008s08100
I
0.918
POPTR_0010s18180
Populus trichocarpa
POPTR_0010s18180
I
0.918
29770.m000336
Ricinus communis
29770.m000336
I
0.917
cassava20891.m1
Manihot esculenta
cassava20891.m1
I
0.917
ANAC020
Vitis vinifera
VIT_19s0085g00950
I
0.916
Thhalv10027064m.g
Eutrema salsugineum
Thhalv10027064m.g
I
0.915
Cagra.1378s0012
Capsella grandiflora
Cagra.1378s0012
I
0.914
Ciclev10005341m.g
Citrus clementina
Ciclev10005341m.g
I
0.911
orange1.1g036998m.g
Citrus sinensis
orange1.1g036998m.g
I
0.911
AMTR_s00149p00068500
Amborella trichopoda
AMTR_s00149p00068500
I
0.909
ANAC020
Arabidopsis thaliana
AT1G54330
D
0.908
Bra003335
Brassica rapa
Bra003335
I
0.908
Bostr.6758s0078
Boechera stricta
Bostr.6758s0078
I
0.908
Bo6g036040
Brassica oleracea
Bo6g036040
I
0.906
Cagra.1310s0016
Capsella grandiflora
Cagra.1310s0016
I
0.904
Carubv10012163m.g
Capsella rubella
Carubv10012163m.g
I
0.904
F775_13960
Aegilops tauschii
F775_13960
I
0.902
MLOC_37844
Hordeum vulgare
MLOC_37844
I
0.902
Traes_5AL_59A8F0CBD
Triticum aestivum
Traes_5AL_59A8F0CBD
I
0.902
Traes_5BL_581C3F5DA
Triticum aestivum
Traes_5BL_581C3F5DA
I
0.902
TRIUR3_13806
Triticum urartu
TRIUR3_13806
I
0.902
chr2.CM0021.650.nc
Lotus japonicus
chr2.CM0021.650.nc
I
0.900
Bo3g185870
Brassica oleracea
Bo3g185870
I
0.898
Bra030807
Brassica rapa
Bra030807
I
0.898
ANAC020
Arabidopsis lyrata
fgenesh2_kg.1__4648__AT1G54330.1
I
0.898
GSMUA_Achr11G01400_001
Musa acuminata
GSMUA_Achr11G01400_001
I
0.896
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.893
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.893
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.890
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.890
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.890
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.890
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.887
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.887
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.886
OB09G25590
Oryza brachyantha
OB09G25590
I
0.886
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.886
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.886
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.886
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.886
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.886
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.886
Si032702m.g
Setaria italica
Si032702m.g
I
0.885
evm.TU.supercontig_38.43
Carica papaya
evm.TU.supercontig_38.43
I
0.884
Aquca_044_00122
Aquilegia coerulea
Aquca_044_00122
I
0.883
Bo1g152220
Brassica oleracea
Bo1g152220
I
0.878
Bra040152
Brassica rapa
Bra040152
I
0.878
Bra031949
Brassica rapa
Bra031949
I
0.875
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.873
anac096
Arabidopsis thaliana
AT5G46590
D
0.872