Bra033308 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra033308 T292672_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC004
M07161_2.00 		Arabidopsis thaliana
CTTVYNYNRYAAGY
RCTTRYNRNRBAAG		 Dap-seq
OMalley et al.(2016)
ANAC004_col_a 		0.975 0.652
NAC004
M07162_2.00 		Arabidopsis thaliana
WVCTTVYNBNRYAAGYWWBNN
NNVWWRCTTRYNVNRBAAGBW		 Dap-seq
OMalley et al.(2016)
ANAC004_colamp_a 		0.975 0.652
NAC005
M07163_2.00 		Arabidopsis thaliana
WWNCTTVYNHHNYAAGTWW
WWACTTRNDDNRBAAGNWW		 Dap-seq
OMalley et al.(2016)
ANAC005_col_a 		0.957 0.635
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra033308.1-P NAC/NAM 5 139

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra033303 Brassica rapa Bra033303 I 0.996
Bo5g002910 Brassica oleracea Bo5g002910 I 0.983
Bra033300 Brassica rapa Bra033300 I 0.983
Bostr.5325s0016 Boechera stricta Bostr.5325s0016 I 0.980
NAC004 Arabidopsis thaliana AT1G02230 D 0.975
ANAC004 Arabidopsis lyrata Al_scaffold_0001_137 I 0.972
Bra033306 Brassica rapa Bra033306 I 0.967
Bo5g002950 Brassica oleracea Bo5g002950 I 0.966
anac005 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000123 I 0.958
NAC005 Arabidopsis thaliana AT1G02250 D 0.957
Bostr.8819s0187 Boechera stricta Bostr.8819s0187 I 0.952
Bostr.5325s0006 Boechera stricta Bostr.5325s0006 I 0.939
anac048 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000114 I 0.923
Bra032615 Brassica rapa Bra032615 I 0.919
Bo5g002960 Brassica oleracea Bo5g002960 I 0.912
Cagra.1968s0041 Capsella grandiflora Cagra.1968s0041 I 0.895
Cagra.1968s0040 Capsella grandiflora Cagra.1968s0040 I 0.894
Carubv10009727m.g Capsella rubella Carubv10009727m.g I 0.894
anac048 Arabidopsis thaliana AT3G04420 I 0.891
Bo8g117560 Brassica oleracea Bo8g117560 I 0.881
Bostr.5325s0017 Boechera stricta Bostr.5325s0017 I 0.879