CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Bb02323
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.Bb02323
T298782_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Bb02323.1.p
NAC/NAM
8
140
PIGFRFKPKEDELVDYYLLPRLQGRPAVPNGSVVEANVYACHPETLINEHRGAGRQDEWYFVSPRARMYGNGVRPARKTRDGRGRWKASTATKEVAQVVVRNGVKFCKSVLNYFEGNPKKETRTKWIMLEITV
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ba02036
Panicum virgatum
Pavir.Ba02036
N
0.995
Si032881m.g
Setaria italica
Si032881m.g
N
0.983
Sb02g026510
Sorghum bicolor
Sb02g026510
I
0.963
F775_00438
Aegilops tauschii
F775_00438
N
0.940
Sb06g024980
Sorghum bicolor
Sb06g024980
N
0.938
LPERR04G17350
Leersia perrieri
LPERR04G17350
I
0.934
OPUNC04G19000
Oryza punctata
OPUNC04G19000
N
0.930
Si010053m.g
Setaria italica
Si010053m.g
N
0.918
Pavir.Gb01143
Panicum virgatum
Pavir.Gb01143
N
0.913
SELMODRAFT_71307
Selaginella moellendorffii
SELMODRAFT_71307
I
0.911
SELMODRAFT_86855
Selaginella moellendorffii
SELMODRAFT_86855
I
0.911
Pavir.Gb01092
Panicum virgatum
Pavir.Gb01092
N
0.903
Pavir.Db00380
Panicum virgatum
Pavir.Db00380
N
0.895
BRADI2G60620
Brachypodium distachyon
BRADI2G60620
N
0.884
BRADI2G03467
Brachypodium distachyon
BRADI2G03467
I
0.874
GSMUA_Achr7G23250_001
Musa acuminata
GSMUA_Achr7G23250_001
I
0.872