CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBN28514
(
Caenorhabditis brenneri
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CBN28514
T301853_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-36
M02418_2.00
Caenorhabditis elegans
NNRDMDCRNN
NNYGHKHYNN
PBM
Weirauch et al.(2014)
pTH6508
0.961
0.729
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN28514
Nuclear receptor
35
108
EMCKVCVKPAAGKHYTVPACHGCKSFFRRAILHKTVYPLCKYDNQCFSRVSRSVRPRKCRHCRLQKCHNVGMIA
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis brenneri
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBG19242
Caenorhabditis briggsae
CBG19242
I
0.992
CRE19708
Caenorhabditis remanei
CRE19708
I
0.968
nhr-36
Caenorhabditis elegans
WBGene00017198
D
0.961