CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-8
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00003607
T306132_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in cholesterol homeostasis. Located in nucleus. Is expressed in intestine. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); lipid storage disease (multiple); melanoma (multiple); and tuberculosis (multiple). Orthologous to human NR1I2 (nuclear receptor subfamily 1 group I member 2); NR1I3 (nuclear receptor subfamily 1 group I member 3); and VDR (vitamin D receptor). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
daf-12
M00685_2.00
Caenorhabditis elegans
NDAGTRCANN
NNTGYACTHN
PBM
Narasimhan et al.(2015)
pTH9108
0.759
0.657
daf-12
M08159_2.00
Caenorhabditis elegans
GWGYGYGYKTGYDKB
VMHRCAMRCRCRCWC
ChIP-seq
Mathelier et al.(2014)
MA0538.1
0.759
0.657
Hr96
M03940_2.00
Drosophila melanogaster
YVRGTRCANVTGYACYBR
YVRGTRCABNTGYACYBR
SELEX
Nitta et al.(2015)
Hr96_1
0.751
0.586
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
F33D4.1a
Nuclear receptor
24
93
RICTVCSDRANGYNFGVLTCESCKAFFRRNASKHKEIKCPFSDSCQITSASRKFCQACRLNKCFAVGMNS
F33D4.1b
Nuclear receptor
24
93
RICTVCSDRANGYNFGVLTCESCKAFFRRNASKHKEIKCPFSDSCQITSASRKFCQACRLNKCFAVGMNS
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
82 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CRE05362
Caenorhabditis remanei
CRE05362
I
0.991
CRE12534
Caenorhabditis remanei
CRE12534
I
0.991
CBN28114
Caenorhabditis brenneri
CBN28114
N
0.988
CBG05944
Caenorhabditis briggsae
CBG05944
I
0.988
CJA16298
Caenorhabditis japonica
CJA16298
N
0.984
CGOC_0001446101
Cylicostephanus goldi
CGOC_0001446101
I
0.980
ANCCAN_22289
Ancylostoma caninum
ANCCAN_22289
I
0.977
TELCIR_04193
Teladorsagia circumcincta
TELCIR_04193
I
0.976
HPBE_0002060301
Heligmosomoides bakeri
HPBE_0002060301
I
0.973
HCOI00567800
Haemonchus contortus
HCOI00567800
I
0.961
HCOI00283900
Haemonchus contortus
HCOI00283900
I
0.961
DICVIV_13447
Dictyocaulus viviparus
DICVIV_13447
N
0.922
DICVIV_13314
Dictyocaulus viviparus
DICVIV_13314
N
0.917
L893_g3995
Steinernema glaseri
L893_g3995
I
0.867
L889_g7248
Steinernema feltiae
L889_g7248
I
0.818
nr1i3
Xenopus tropicalis
XB-GENE-479859
I
0.816
L898_g23217
Steinernema monticolum
L898_g23217
I
0.813
L798_15710
Zootermopsis nevadensis
L798_15710
I
0.813
L596_g25556
Steinernema carpocapsae
L596_g25556
I
0.812
L892_g14860
Steinernema scapterisci
L892_g14860
I
0.805
WUBG_13334
Wuchereria bancrofti
WUBG_13334
I
0.795
Bm3787
Brugia malayi
Bm3787
I
0.795
EEL_0000817201
Elaeophora elaphi
EEL_0000817201
I
0.795
ISCW009328
Ixodes scapularis
ISCW009328
I
0.790
nAv.1.0.1.g10286
Acanthocheilonema viteae
nAv.1.0.1.g10286
I
0.788
NR1I2
Oryctolagus cuniculus
ENSOCUG00000006125
I
0.783
DAPPUDRAFT_303110
Daphnia pulex
DAPPUDRAFT_303110
I
0.782
CBN22467
Caenorhabditis brenneri
CBN22467
N
0.770
L898_g10498
Steinernema monticolum
L898_g10498
I
0.769
L889_g10853
Steinernema feltiae
L889_g10853
I
0.769
WUBG_12640
Wuchereria bancrofti
WUBG_12640
I
0.769
ASIM_0001146101
Anisakis simplex
ASIM_0001146101
I
0.769
DME_0000943901
Dracunculus medinensis
DME_0000943901
I
0.769
BXY_1418300
Bursaphelenchus xylophilus
BXY_1418300
I
0.769
ASU_07898
Ascaris suum
ASU_07898
I
0.769
L596_g8771
Steinernema carpocapsae
L596_g8771
I
0.769
EVEC_0001257601
Enterobius vermicularis
EVEC_0001257601
I
0.769
WBGene00239037
Onchocerca volvulus
WBGene00239037
I
0.769
SMUV_0001002101
Syphacia muris
SMUV_0001002101
I
0.769
PTRK_0001378700
Parastrongyloides trichosuri
PTRK_0001378700
I
0.769
SPAL_0001591300
Strongyloides papillosus
SPAL_0001591300
I
0.769
SSTP_0001172300
Strongyloides stercoralis
SSTP_0001172300
I
0.769
TCLT_0000386701
Thelazia callipaeda
TCLT_0000386701
I
0.769
SVE_0996600
Strongyloides venezuelensis
SVE_0996600
I
0.769
LOAG_10538
Loa loa
LOAG_10538
I
0.769
nDi.2.2.2.g09652
Dirofilaria immitis
nDi.2.2.2.g09652
I
0.769
Hsal_04850--XP_624213.2_APIME
Harpegnathos saltator
Hsal_04850--XP_624213.2_APIME
I
0.764
NV10187
Nasonia vitripennis
NV10187
I
0.764
GB52904
Apis mellifera
GB52904
I
0.764
nDi.2.2.2.g04518
Dirofilaria immitis
nDi.2.2.2.g04518
I
0.763
ACEP16468
Atta cephalotes
ACEP16468
I
0.760
TELCIR_05516
Teladorsagia circumcincta
TELCIR_05516
I
0.759
CRE07237
Caenorhabditis remanei
CRE07237
I
0.759
CJA11532
Caenorhabditis japonica
CJA11532
I
0.759
HHAL000201-PA
Halyomorpha halys
HHAL000201-PA
I
0.759
CBN31767
Caenorhabditis brenneri
CBN31767
I
0.759
CBG04512
Caenorhabditis briggsae
CBG04512
I
0.759
Cflo_03542--XP_624213.2_APIME
Camponotus floridanus
Cflo_03542--XP_624213.2_APIME
I
0.759
daf-12
Caenorhabditis elegans
WBGene00000908
D
0.759
ANCCAN_15412
Ancylostoma caninum
ANCCAN_15412
I
0.759
scaffold61-EXSNAP2012.64
Pristionchus exspectatus
scaffold61-EXSNAP2012.64
I
0.759
ANCDUO_17434
Ancylostoma duodenale
ANCDUO_17434
I
0.759
ACOC_0000064201
Angiostrongylus costaricensis
ACOC_0000064201
I
0.759
BXY_1432000
Bursaphelenchus xylophilus
BXY_1432000
I
0.753
MhA1_Contig1158.frz3.gene18
Meloidogyne hapla
MhA1_Contig1158.frz3.gene18
I
0.752
Minc13296
Meloidogyne incognita
Minc13296
I
0.752
Minc18589
Meloidogyne incognita
Minc18589
I
0.752
GG11347
Drosophila erecta
FBgn0103647
I
0.751
GI22223
Drosophila mojavensis
FBgn0144951
I
0.751
GF16320
Drosophila ananassae
FBgn0093341
I
0.751
Hr96
Drosophila grimshawi
FBgn0020174
I
0.751
Hr96
Drosophila melanogaster
FBgn0015240
D
0.751
GM17786
Drosophila sechellia
FBgn0172693
I
0.751
GA11197
Drosophila pseudoobscura
FBgn0071252
I
0.751
GD21158
Drosophila simulans
FBgn0192609
I
0.751
MDOA002084
Musca domestica
MDOA002084
I
0.751
LCUP002913
Lucilia cuprina
LCUP002913
I
0.751
GE23543
Drosophila yakuba
FBgn0240719
I
0.751
PPAI005921
Phlebotomus papatasi
PPAI005921
I
0.751
GJ24344
Drosophila virilis
FBgn0211424
I
0.751
LDEC005794
Leptinotarsa decemlineata
LDEC005794
I
0.746