CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-237
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00021610
T306380_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-42
M00691_2.00
Caenorhabditis elegans
NNYGTRNYNN
NNRNYACRNN
PBM
Narasimhan et al.(2015)
pTH9085
0.864
0.600
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Y46H3D.6
Nuclear receptor
8
79
QICRVCGECADAVHFGALSCRACAAFFRRKVAAGKPLSSSRCSGSCKLENQVLRRLCAKCRYEKCVQVGMRT
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CRE09147
Caenorhabditis remanei
CRE09147
I
0.952
CBG19061
Caenorhabditis briggsae
CBG19061
I
0.864
CRE26966
Caenorhabditis remanei
CRE26966
I
0.864
nhr-42
Caenorhabditis elegans
WBGene00003632
D
0.864
CJA17568
Caenorhabditis japonica
CJA17568
I
0.862
CBG10499
Caenorhabditis briggsae
CBG10499
I
0.855
CBN06077
Caenorhabditis brenneri
CBN06077
I
0.801