OESDEN_18512 (Oesophagostomum dentatum)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 OESDEN_18512 T312863_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.765 0.765
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.765 0.765
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.765 0.765
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.765 0.765
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.765 0.765
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.765 0.765
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.765 0.765
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.753 0.753
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.753 0.753
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.753 0.753
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.753 0.753
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.728 0.728
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.728 0.728
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.728 0.728
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.728 0.728
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.728 0.728
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.728 0.728
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.728 0.728
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.728 0.728
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.728 0.728
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.728 0.728
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.728 0.728
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.728 0.728
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.728 0.728
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.728 0.728
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.728 0.728
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.728 0.728
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.728 0.728
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.728 0.728
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.728 0.728
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.728 0.728
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.704 0.704
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.704 0.704
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.704 0.704
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.704 0.704
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OESDEN_18512 Paired box 24 104

Links

Other Paired box family TFs
Other Oesophagostomum dentatum TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_02265 Ancylostoma ceylanicum ANCCEY_02265 I 0.963
SMUV_0000337801 Syphacia muris SMUV_0000337801 I 0.790
ASIM_0001701001 Anisakis simplex ASIM_0001701001 I 0.778
pax1a Tetraodon nigroviridis ENSTNIG00000016891 I 0.765
ENSONIG00000008137 Oreochromis niloticus ENSONIG00000008137 I 0.765
pax1 Oryzias latipes ENSORLG00000017412 I 0.765
pax1a Takifugu rubripes ENSTRUG00000008079 I 0.765
pax1 Xenopus tropicalis XB-GENE-487951 I 0.765
ENSAMXG00000018287 Astyanax mexicanus ENSAMXG00000018287 I 0.765
estExt_fgenesh2_pg.C_420056 Branchiostoma floridae estExt_fgenesh2_pg.C_420056 I 0.765
MDOA001030 Musca domestica MDOA001030 I 0.765
pax9 Tetraodon nigroviridis ENSTNIG00000019284 I 0.753
pax9 Takifugu rubripes ENSTRUG00000011965 I 0.753
ENSPFOG00000017550 Poecilia formosa ENSPFOG00000017550 I 0.753
ENSXMAG00000015762 Xiphophorus maculatus ENSXMAG00000015762 I 0.753
ENSLOCG00000013992 Lepisosteus oculatus ENSLOCG00000013992 I 0.753
ENSGMOG00000009128 Gadus morhua ENSGMOG00000009128 I 0.753
pax1a Gasterosteus aculeatus ENSGACG00000006987 I 0.753
ENSAMXG00000002161 Astyanax mexicanus ENSAMXG00000002161 I 0.753
ENSONIG00000000990 Oreochromis niloticus ENSONIG00000000990 I 0.753
pax9 Gasterosteus aculeatus ENSGACG00000011298 I 0.753
TCNE_0001785701 Toxocara canis TCNE_0001785701 I 0.741
ENSPMAG00000010414 Petromyzon marinus ENSPMAG00000010414 I 0.741
CLEC006621 Cimex lectularius CLEC006621 I 0.732
SBAD_0001213701 Soboliphyme baturini SBAD_0001213701 I 0.732
NBR_0002158101 Nippostrongylus brasiliensis NBR_0002158101 N 0.730
pax2a Danio rerio ENSDARG00000028148 I 0.728
ENSPFOG00000003702 Poecilia formosa ENSPFOG00000003702 I 0.728
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.728
ENSONIG00000016065 Oreochromis niloticus ENSONIG00000016065 I 0.728
CLEC012019 Cimex lectularius CLEC012019 I 0.728
pax-1 Caenorhabditis elegans WBGene00003937 I 0.728
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.728
PAX5 Tursiops truncatus ENSTTRG00000006049 I 0.727
PAX5 Tupaia belangeri ENSTBEG00000007983 I 0.727
ENSTSYG00000008085 Tarsius syrichta ENSTSYG00000008085 I 0.727
L889_g28670 Steinernema feltiae L889_g28670 I 0.716
L596_g7168 Steinernema carpocapsae L596_g7168 I 0.716
pax2.L Xenopus laevis XB-GENE-486805 I 0.716
Gfo_R012945 Geospiza fortis Gfo_R012945 I 0.716
HelroG124549 Helobdella robusta HelroG124549 I 0.716
L898_g18055 Steinernema monticolum L898_g18055 I 0.716
AGAP000057 Anopheles gambiae AGAP000057 I 0.704
ACUA027429 Anopheles culicifacies ACUA027429 I 0.704
ADIR000964 Anopheles dirus ADIR000964 I 0.704
ACHR009800 Anopheles christyi ACHR009800 I 0.704
AMIN002123 Anopheles minimus AMIN002123 I 0.704
AFUN011579 Anopheles funestus AFUN011579 I 0.704
AMEC016969 Anopheles melas AMEC016969 I 0.704
AMEM003247 Anopheles merus AMEM003247 I 0.704
AALB001179 Anopheles albimanus AALB001179 I 0.703