CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
pax-1
(
Caenorhabditis elegans
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00292 (PAX)
IPR001523
WBGene00003937
T312107_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in epithelial cell and pharyngeal cell. Human ortholog(s) of this gene implicated in branchiootorenal syndrome and tooth agenesis. Orthologous to several human genes including PAX9 (paired box 9). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.752
0.752
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.752
0.752
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.752
0.752
pax9
M11204_2.00
Danio rerio
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.712
0.712
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.704
0.704
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.704
0.704
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.704
0.704
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.704
0.704
PAX1
M11207_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.704
0.704
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.704
0.704
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.704
0.704
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
K07C11.1
Paired box
61
185
KTAEVNQLGGVFVNGRPLPFEMRCKIVELSRQGTRPCDISRQLKISHGCVSKILTRFSENGTIMPGTIGGSRPRVTTPKVVEYIRSLKRSDPGIFAWEIRDRLISADICDRANLPSVSSISRILR
Links
Other
Paired box
family TFs
Other
Caenorhabditis elegans
TFs
221 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBN25998
Caenorhabditis brenneri
CBN25998
I
0.976
CBN07010
Caenorhabditis brenneri
CBN07010
I
0.976
CRE05503
Caenorhabditis remanei
CRE05503
I
0.968
CBG24786
Caenorhabditis briggsae
CBG24786
I
0.912
CJA06788
Caenorhabditis japonica
CJA06788
I
0.896
PEQ_0000430901
Parascaris equorum
PEQ_0000430901
I
0.775
SMUV_0000337801
Syphacia muris
SMUV_0000337801
I
0.768
EVEC_0000163101
Enterobius vermicularis
EVEC_0000163101
I
0.768
ACAC_0001249001
Angiostrongylus cantonensis
ACAC_0001249001
I
0.763
HHAL005838-PA
Halyomorpha halys
HHAL005838-PA
I
0.760
GG17455
Drosophila erecta
FBgn0109681
I
0.752
ASU_08322
Ascaris suum
ASU_08322
I
0.752
ALUE_0000964501
Ascaris lumbricoides
ALUE_0000964501
I
0.752
LCUP007799
Lucilia cuprina
LCUP007799
I
0.752
GE24855
Drosophila yakuba
FBgn0241954
I
0.752
GK14101
Drosophila willistoni
FBgn0216107
I
0.752
TCNE_0001785701
Toxocara canis
TCNE_0001785701
I
0.752
GH17421
Drosophila grimshawi
FBgn0124891
I
0.752
Poxm
Drosophila melanogaster
FBgn0003129
D
0.752
GA21910
Drosophila pseudoobscura
FBgn0081895
I
0.752
GF16668
Drosophila ananassae
FBgn0093689
I
0.752
GI22750
Drosophila mojavensis
FBgn0145477
I
0.752
GL24118
Drosophila persimilis
FBgn0161708
I
0.752
GJ22751
Drosophila virilis
FBgn0209855
I
0.752
GM26349
Drosophila sechellia
FBgn0181202
I
0.752
LLOJ004809
Lutzomyia longipalpis
LLOJ004809
I
0.745
ASIS022893
Anopheles sinensis
ASIS022893
I
0.745
AFUN001734
Anopheles funestus
AFUN001734
I
0.745
AQUA002471
Anopheles quadriannulatus
AQUA002471
I
0.744
ASTEI07741
Anopheles stephensi
ASTEI07741
I
0.744
ACOC_0000962101
Angiostrongylus costaricensis
ACOC_0000962101
I
0.744
AMIN005066
Anopheles minimus
AMIN005066
I
0.744
PPAI009002
Phlebotomus papatasi
PPAI009002
I
0.744
MDOA001030
Musca domestica
MDOA001030
I
0.744
LLOJ004808
Lutzomyia longipalpis
LLOJ004808
I
0.744
AARA001070
Anopheles arabiensis
AARA001070
I
0.744
AALB006349
Anopheles albimanus
AALB006349
I
0.744
YQE_12494
Dendroctonus ponderosae
YQE_12494
I
0.744
TC008838
Tribolium castaneum
TC008838
I
0.744
PHUM515110
Pediculus humanus
PHUM515110
I
0.744
AATE019429
Anopheles atroparvus
AATE019429
I
0.744
ACUA000500
Anopheles culicifacies
ACUA000500
I
0.744
AMAM000649
Anopheles maculatus
AMAM000649
I
0.744
AFAF006072
Anopheles farauti
AFAF006072
I
0.744
AEPI005638
Anopheles epiroticus
AEPI005638
I
0.744
ADIR000995
Anopheles dirus
ADIR000995
I
0.744
AMEC017516
Anopheles melas
AMEC017516
I
0.744
AMEM000130
Anopheles merus
AMEM000130
I
0.744
AGAP001493
Anopheles gambiae
AGAP001493
I
0.744
L893_g11572
Steinernema glaseri
L893_g11572
I
0.744
ADAC006866
Anopheles darlingi
ADAC006866
I
0.744
DICVIV_10778
Dictyocaulus viviparus
DICVIV_10778
I
0.744
ANCCEY_02265
Ancylostoma ceylanicum
ANCCEY_02265
I
0.744
ANCDUO_05898
Ancylostoma duodenale
ANCDUO_05898
I
0.739
L898_g3148
Steinernema monticolum
L898_g3148
I
0.736
ANCCAN_01783
Ancylostoma caninum
ANCCAN_01783
I
0.736
HPBE_0001739601
Heligmosomoides bakeri
HPBE_0001739601
I
0.736
ISCW011634
Ixodes scapularis
ISCW011634
I
0.736
ACEP27324
Atta cephalotes
ACEP27324
I
0.736
SBAD_0001213701
Soboliphyme baturini
SBAD_0001213701
I
0.732
OESDEN_18512
Oesophagostomum dentatum
OESDEN_18512
I
0.728
SINV15629
Solenopsis invicta
SINV15629
I
0.728
NV11293
Nasonia vitripennis
NV11293
I
0.728
GB52620
Apis mellifera
GB52620
I
0.728
DAPPUDRAFT_307722
Daphnia pulex
DAPPUDRAFT_307722
I
0.728
Cflo_08772--XP_001121954.1_APIME
Camponotus floridanus
Cflo_08772--XP_001121954.1_APIME
I
0.728
HPLM_0000508801
Haemonchus placei
HPLM_0000508801
I
0.728
L889_g19368
Steinernema feltiae
L889_g19368
I
0.728
L596_g23601
Steinernema carpocapsae
L596_g23601
I
0.728
L892_g31296
Steinernema scapterisci
L892_g31296
I
0.728
SMAR007866
Strigamia maritima
SMAR007866
I
0.728
ENSTSYG00000008085
Tarsius syrichta
ENSTSYG00000008085
I
0.727
PAX5
Tupaia belangeri
ENSTBEG00000007983
I
0.727
PAX5
Tursiops truncatus
ENSTTRG00000006049
I
0.727
SROB_0000822501
Schistosoma rodhaini
SROB_0000822501
I
0.726
SMTD_0001918101
Schistosoma mattheei
SMTD_0001918101
I
0.726
HMEL004481
Heliconius melpomene
HMEL004481
I
0.720
KGM_09724
Danaus plexippus
KGM_09724
I
0.720
TELCIR_14257
Teladorsagia circumcincta
TELCIR_14257
I
0.720
CLEC012019
Cimex lectularius
CLEC012019
I
0.720
CapteG64892
Capitella teleta
CapteG64892
I
0.720
BGIBMGA000787
Bombyx mori
BGIBMGA000787
I
0.720
SSTP_0000083300
Strongyloides stercoralis
SSTP_0000083300
I
0.720
SPAL_0000396700
Strongyloides papillosus
SPAL_0000396700
I
0.720
SVUK_0000340101
Strongylus vulgaris
SVUK_0000340101
I
0.716
Pax6
Mus musculus
ENSMUSG00000027168
D
0.714
CLEC006621
Cimex lectularius
CLEC006621
I
0.714
ENSAPLG00000014321
Anas platyrhynchos
ENSAPLG00000014321
I
0.713
ENSXMAG00000019114
Xiphophorus maculatus
ENSXMAG00000019114
I
0.712
ENSXMAG00000015762
Xiphophorus maculatus
ENSXMAG00000015762
I
0.712
ENSAMXG00000002161
Astyanax mexicanus
ENSAMXG00000002161
I
0.712
pax9
Takifugu rubripes
ENSTRUG00000011965
I
0.712
pax9
Tetraodon nigroviridis
ENSTNIG00000019284
I
0.712
ACYPI005583
Acyrthosiphon pisum
ACYPI005583
I
0.712
ENSTNIG00000002104
Tetraodon nigroviridis
ENSTNIG00000002104
I
0.712
SVE_0281100
Strongyloides venezuelensis
SVE_0281100
I
0.712
ENSONIG00000018717
Oreochromis niloticus
ENSONIG00000018717
I
0.712
pax1a
Danio rerio
ENSDARG00000008203
I
0.712
OFLC_0000054701
Onchocerca flexuosa
OFLC_0000054701
N
0.712
pax1
Xenopus tropicalis
XB-GENE-487951
I
0.712
ENSAMXG00000018287
Astyanax mexicanus
ENSAMXG00000018287
I
0.712
pax9
Danio rerio
ENSDARG00000053829
D
0.712
ENSLOCG00000013992
Lepisosteus oculatus
ENSLOCG00000013992
I
0.712
pax9
Gasterosteus aculeatus
ENSGACG00000011298
I
0.712
ENSGMOG00000009128
Gadus morhua
ENSGMOG00000009128
I
0.712
ENSLACG00000015921
Latimeria chalumnae
ENSLACG00000015921
I
0.712
ENSONIG00000000990
Oreochromis niloticus
ENSONIG00000000990
I
0.712
Sakowv30044183m.g
Saccoglossus kowalevskii
Sakowv30044183m.g
I
0.712
ENSPFOG00000003208
Poecilia formosa
ENSPFOG00000003208
I
0.712
ENSPFOG00000017550
Poecilia formosa
ENSPFOG00000017550
I
0.712
PAX9
Loxodonta africana
ENSLAFG00000017541
I
0.710
RPRC009438
Rhodnius prolixus
RPRC009438
I
0.707
PAX9
Pteropus vampyrus
ENSPVAG00000003728
I
0.707
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0
I
0.706
PTRK_0000192900
Parastrongyloides trichosuri
PTRK_0000192900
I
0.705
Pvit_17942
Pogona vitticeps
Pvit_17942
I
0.704
Afo_R004464
Aptenodytes forsteri
Afo_R004464
I
0.704
Ogr19508
Ophisaurus gracilis
Ogr19508
I
0.704
Alligator_sinensis_CCG004503.1
Alligator sinensis
Alligator_sinensis_CCG004503.1
I
0.704
Aan_R005718
Calypte anna
Aan_R005718
I
0.704
ENSP00000384817-D1
Bos grunniens
ENSP00000384817-D1
I
0.704
ENSBTAP00000008861-D1
Bos grunniens
ENSBTAP00000008861-D1
I
0.704
ENSP00000381499
Macaca fascicularis
ENSP00000381499
I
0.704
pax1.S
Xenopus laevis
XB-GENE-865751
I
0.704
pax9.L
Xenopus laevis
XB-GENE-864845
I
0.704
Ogr18451
Ophisaurus gracilis
Ogr18451
I
0.704
pax9
Xenopus tropicalis
XB-GENE-482238
I
0.704
nDi.2.2.2.g06454
Dirofilaria immitis
nDi.2.2.2.g06454
N
0.704
ENSP00000355245
Macaca fascicularis
ENSP00000355245
I
0.704
ENSSTOG00000003000
Ictidomys tridecemlineatus
ENSSTOG00000003000
I
0.704
PAX1
Homo sapiens
ENSG00000125813
D
0.704
PAX9
Homo sapiens
ENSG00000198807
D
0.704
pax1a
Gasterosteus aculeatus
ENSGACG00000006987
I
0.704
PAX9
Gallus gallus
ENSGALG00000010114
I
0.704
PAX1
Felis catus
ENSFCAG00000004293
I
0.704
PAX9
Felis catus
ENSFCAG00000001024
I
0.704
PAX1
Erinaceus europaeus
ENSEEUG00000007846
I
0.704
PAX9
Echinops telfairi
ENSETEG00000002086
I
0.704
ENSFALG00000006155
Ficedula albicollis
ENSFALG00000006155
I
0.704
ENSGALG00000028576
Gallus gallus
ENSGALG00000028576
I
0.704
PAX9
Gorilla gorilla
ENSGGOG00000001528
I
0.704
ENSMEUG00000010140
Macropus eugenii
ENSMEUG00000010140
I
0.704
PAX9
Microcebus murinus
ENSMICG00000010808
I
0.704
PAX9
Myotis lucifugus
ENSMLUG00000011407
I
0.704
PAX1
Tursiops truncatus
ENSTTRG00000002444
I
0.704
ENSMEUG00000002095
Macropus eugenii
ENSMEUG00000002095
I
0.704
ENSLOCG00000016871
Lepisosteus oculatus
ENSLOCG00000016871
I
0.704
PAX1
Gorilla gorilla
ENSGGOG00000016075
I
0.704
ENSGMOG00000018913
Gadus morhua
ENSGMOG00000018913
I
0.704
ENSLACG00000009610
Latimeria chalumnae
ENSLACG00000009610
I
0.704
PAX9
Equus caballus
ENSECAG00000023712
I
0.704
Pax1
Dipodomys ordii
ENSDORG00000016051
I
0.704
ENSAPLG00000012856
Anas platyrhynchos
ENSAPLG00000012856
I
0.704
PAX1
Bos taurus
ENSBTAG00000006742
I
0.704
PAX9
Bos taurus
ENSBTAG00000009186
I
0.704
PAX1
Canis familiaris
ENSCAFG00000005170
I
0.704
ENSAMXG00000008583
Astyanax mexicanus
ENSAMXG00000008583
I
0.704
ENSAMEG00000012642
Ailuropoda melanoleuca
ENSAMEG00000012642
I
0.704
ENSACAG00000001481
Anolis carolinensis
ENSACAG00000001481
I
0.704
ENSACAG00000010563
Anolis carolinensis
ENSACAG00000010563
I
0.704
ENSAMEG00000002906
Ailuropoda melanoleuca
ENSAMEG00000002906
I
0.704
PAX9
Canis familiaris
ENSCAFG00000013690
I
0.704
PAX1
Callithrix jacchus
ENSCJAG00000005773
I
0.704
ENSCSAVG00000007806
Ciona savignyi
ENSCSAVG00000007806
I
0.704
pax1b
Danio rerio
ENSDARG00000073814
I
0.704
PAX9
Dasypus novemcinctus
ENSDNOG00000000352
I
0.704
PAX1
Dasypus novemcinctus
ENSDNOG00000033546
I
0.704
ENSCSAG00000015463
Chlorocebus sabaeus
ENSCSAG00000015463
I
0.704
ENSCSAG00000011068
Chlorocebus sabaeus
ENSCSAG00000011068
I
0.704
PAX9
Callithrix jacchus
ENSCJAG00000016460
I
0.704
PAX1
Cavia porcellus
ENSCPOG00000002886
I
0.704
PAX9
Cavia porcellus
ENSCPOG00000010951
I
0.704
PAX9
Macaca mulatta
ENSMMUG00000009648
I
0.704
PAX1
Myotis lucifugus
ENSMLUG00000014710
I
0.704
PAX9
Pan troglodytes
ENSPTRG00000006281
I
0.704
PAX1
Pan troglodytes
ENSPTRG00000013311
I
0.704
PAX1
Pteropus vampyrus
ENSPVAG00000002604
I
0.704
Pax9
Rattus norvegicus
ENSRNOG00000008826
I
0.704
ENSPSIG00000010961
Pelodiscus sinensis
ENSPSIG00000010961
I
0.704
ENSPPYG00000010758
Pongo abelii
ENSPPYG00000010758
I
0.704
ENSPANG00000008282
Papio anubis
ENSPANG00000008282
I
0.704
PAX1
Procavia capensis
ENSPCAG00000003556
I
0.704
ENSPMAG00000010308
Petromyzon marinus
ENSPMAG00000010308
I
0.704
ENSPPYG00000005755
Pongo abelii
ENSPPYG00000005755
I
0.704
PAX9
Sorex araneus
ENSSARG00000000337
I
0.704
ENSSHAG00000005531
Sarcophilus harrisii
ENSSHAG00000005531
I
0.704
ENSTGUG00000007526
Taeniopygia guttata
ENSTGUG00000007526
I
0.704
PAX9
Taeniopygia guttata
ENSTGUG00000012015
I
0.704
pax1a
Tetraodon nigroviridis
ENSTNIG00000016891
I
0.704
pax1a
Takifugu rubripes
ENSTRUG00000008079
I
0.704
PAX9
Tupaia belangeri
ENSTBEG00000002460
I
0.704
ENSSTOG00000015730
Ictidomys tridecemlineatus
ENSSTOG00000015730
I
0.704
ENSSHAG00000017556
Sarcophilus harrisii
ENSSHAG00000017556
I
0.704
ENSSSCG00000001943
Sus scrofa
ENSSSCG00000001943
I
0.704
PAX1
Sus scrofa
ENSSSCG00000007112
I
0.704
PAX6
Homo sapiens
ENSG00000007372
D
0.704
ENSPANG00000000932
Papio anubis
ENSPANG00000000932
I
0.704
pax1
Oryzias latipes
ENSORLG00000017412
I
0.704
Pax1
Mus musculus
ENSMUSG00000037034
I
0.704
ENSNLEG00000003346
Nomascus leucogenys
ENSNLEG00000003346
I
0.704
PAX1
Macaca mulatta
ENSMMUG00000019409
I
0.704
Pax9
Mus musculus
ENSMUSG00000001497
I
0.704
ENSMPUG00000016259
Mustela putorius furo
ENSMPUG00000016259
I
0.704
PAX1
Monodelphis domestica
ENSMODG00000006198
I
0.704
PAX9
Monodelphis domestica
ENSMODG00000012681
I
0.704
ENSMPUG00000001187
Mustela putorius furo
ENSMPUG00000001187
I
0.704
PAX1
Ornithorhynchus anatinus
ENSOANG00000002008
I
0.704
ENSNLEG00000010049
Nomascus leucogenys
ENSNLEG00000010049
I
0.704
ENSOGAG00000013131
Otolemur garnettii
ENSOGAG00000013131
I
0.704
PAX9
Ornithorhynchus anatinus
ENSOANG00000014065
I
0.704
PAX1
Otolemur garnettii
ENSOGAG00000033162
I
0.704
PAX1
Ochotona princeps
ENSOPRG00000017249
I
0.704
PAX1
Oryctolagus cuniculus
ENSOCUG00000003276
I
0.704
ENSOARG00000004951
Ovis aries
ENSOARG00000004951
I
0.704
ENSOARG00000008050
Ovis aries
ENSOARG00000008050
I
0.704
ENSONIG00000008137
Oreochromis niloticus
ENSONIG00000008137
I
0.704
AALB001179
Anopheles albimanus
AALB001179
I
0.703
PAX1
Loxodonta africana
ENSLAFG00000008908
I
0.702
PAX9
Meleagris gallopavo
ENSMGAG00000012530
I
0.702
PAX1
Microcebus murinus
ENSMICG00000016968
I
0.702
ASIM_0001701001
Anisakis simplex
ASIM_0001701001
I
0.702