ENSAPLG00000014321 (Anas platyrhynchos)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSAPLG00000014321 T311579_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		1.000 1.000
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		1.000 1.000
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		1.000 1.000
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		1.000 1.000
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.966 0.966
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.966 0.966
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.966 0.966
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.954 0.954
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.874 0.874
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.874 0.874
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.874 0.874
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.770 0.770
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.759 0.759
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.759 0.759
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.759 0.759
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.759 0.759
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.759 0.759
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.759 0.759
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.747 0.747
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.736 0.736
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.736 0.736
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.736 0.736
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.736 0.736
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.736 0.736
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.736 0.736
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.736 0.736
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.736 0.736
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.736 0.736
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.736 0.736
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.736 0.736
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.736 0.736
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.736 0.736
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.736 0.736
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.736 0.736
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.736 0.736
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.701 0.701
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.701 0.701
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.701 0.701
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAPLP00000014146 Paired box 1 87

Links

Other Paired box family TFs
Other Anas platyrhynchos TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
pax1a Gasterosteus aculeatus ENSGACG00000006987 I 0.977
ENSAMXG00000018287 Astyanax mexicanus ENSAMXG00000018287 I 0.966
ENSONIG00000008137 Oreochromis niloticus ENSONIG00000008137 I 0.966
pax1 Oryzias latipes ENSORLG00000017412 I 0.966
ENSPFOG00000003208 Poecilia formosa ENSPFOG00000003208 I 0.966
pax1a Tetraodon nigroviridis ENSTNIG00000016891 I 0.966
pax1a Takifugu rubripes ENSTRUG00000008079 I 0.966
ENSXMAG00000019114 Xiphophorus maculatus ENSXMAG00000019114 I 0.966
pax1 Xenopus tropicalis XB-GENE-487951 I 0.966
ENSPMAG00000010414 Petromyzon marinus ENSPMAG00000010414 I 0.954
ENSAMXG00000002161 Astyanax mexicanus ENSAMXG00000002161 I 0.943
pax9 Gasterosteus aculeatus ENSGACG00000011298 I 0.943
ENSGMOG00000009128 Gadus morhua ENSGMOG00000009128 I 0.943
ENSLOCG00000013992 Lepisosteus oculatus ENSLOCG00000013992 I 0.943
ENSONIG00000000990 Oreochromis niloticus ENSONIG00000000990 I 0.943
ENSPFOG00000017550 Poecilia formosa ENSPFOG00000017550 I 0.943
pax9 Tetraodon nigroviridis ENSTNIG00000019284 I 0.943
pax9 Takifugu rubripes ENSTRUG00000011965 I 0.943
ENSXMAG00000015762 Xiphophorus maculatus ENSXMAG00000015762 I 0.943
LotgiG161614 Lottia gigantea LotgiG161614 I 0.943
estExt_fgenesh2_pg.C_420056 Branchiostoma floridae estExt_fgenesh2_pg.C_420056 I 0.920
DAPPUDRAFT_307722 Daphnia pulex DAPPUDRAFT_307722 I 0.885
CLEC012019 Cimex lectularius CLEC012019 I 0.885
MDOA001030 Musca domestica MDOA001030 I 0.885
Gfo_R012945 Geospiza fortis Gfo_R012945 I 0.839
TCNE_0001785701 Toxocara canis TCNE_0001785701 I 0.805
ANCCEY_02265 Ancylostoma ceylanicum ANCCEY_02265 I 0.793
SMUV_0000337801 Syphacia muris SMUV_0000337801 I 0.793
L893_g11572 Steinernema glaseri L893_g11572 I 0.782
pax8 Xenopus tropicalis XB-GENE-483693 I 0.781
PAX7 Homo sapiens ENSG00000009709 D 0.770
Pax7 Dipodomys ordii ENSDORG00000011854 I 0.770
ENSMODG00000025571 Monodelphis domestica ENSMODG00000025571 I 0.770
PAX7 Procavia capensis ENSPCAG00000005303 I 0.770
Alligator_sinensis_CCG006492.1 Alligator sinensis Alligator_sinensis_CCG006492.1 I 0.770
ASIM_0001701001 Anisakis simplex ASIM_0001701001 I 0.770
Ocbimv22010462m.g Octopus bimaculoides Ocbimv22010462m.g I 0.765
AFUN001734 Anopheles funestus AFUN001734 I 0.765
ASIS022893 Anopheles sinensis ASIS022893 I 0.765
SVUK_0000340101 Strongylus vulgaris SVUK_0000340101 I 0.757
LLOJ004809 Lutzomyia longipalpis LLOJ004809 I 0.755
ANCDUO_05898 Ancylostoma duodenale ANCDUO_05898 I 0.754
ADAC004542 Anopheles darlingi ADAC004542 I 0.750
PAX5 Homo sapiens ENSG00000196092 D 0.750
ENSSSCG00000016229 Sus scrofa ENSSSCG00000016229 I 0.750
AALB006342 Anopheles albimanus AALB006342 I 0.750
AARA001120 Anopheles arabiensis AARA001120 I 0.750
pax8 Danio rerio ENSDARG00000015879 I 0.747
pax2a Danio rerio ENSDARG00000028148 I 0.747
Pax8 Dipodomys ordii ENSDORG00000002606 I 0.747
ENSGMOG00000000463 Gadus morhua ENSGMOG00000000463 I 0.747
ENSONIG00000016065 Oreochromis niloticus ENSONIG00000016065 I 0.747
ENSPFOG00000003702 Poecilia formosa ENSPFOG00000003702 I 0.747
pax5 Tetraodon nigroviridis ENSTNIG00000005085 I 0.747
pax8 Tetraodon nigroviridis ENSTNIG00000009029 I 0.747
L596_g7168 Steinernema carpocapsae L596_g7168 I 0.747
L889_g28670 Steinernema feltiae L889_g28670 I 0.747
L898_g18055 Steinernema monticolum L898_g18055 I 0.747
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.736
PAX5 Anolis carolinensis ENSACAG00000011646 I 0.736
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.736
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.736
SMAR014608 Strigamia maritima SMAR014608 I 0.736
pax2.L Xenopus laevis XB-GENE-486805 I 0.724
ENSLOCG00000015261 Lepisosteus oculatus ENSLOCG00000015261 I 0.724
PAX8 Microcebus murinus ENSMICG00000003265 I 0.724
PAX8 Ochotona princeps ENSOPRG00000012910 I 0.724
HelroG124549 Helobdella robusta HelroG124549 I 0.724
SNAPOd2T00015161001 Oikopleura dioica SNAPOd2T00015161001 I 0.719
MESCA000247 Megaselia scalaris MESCA000247 I 0.717
ENSPSIG00000012152 Pelodiscus sinensis ENSPSIG00000012152 I 0.714
Pax8 Rattus norvegicus ENSRNOG00000026203 D 0.714
AGAP000057 Anopheles gambiae AGAP000057 I 0.713
CGI_10012686 Crassostrea gigas CGI_10012686 I 0.713
GH23966 Drosophila grimshawi FBgn0131423 I 0.713
GI14046 Drosophila mojavensis FBgn0136800 I 0.713
GL18401 Drosophila persimilis FBgn0156002 I 0.713
GJ13730 Drosophila virilis FBgn0200951 I 0.713
GK13586 Drosophila willistoni FBgn0215594 I 0.713
spa-sv Drosophila pseudoobscura FBgn0249275 I 0.713
LotgiG135549 Lottia gigantea LotgiG135549 I 0.713
MESCA003563 Megaselia scalaris MESCA003563 I 0.713
pax-1 Caenorhabditis elegans WBGene00003937 I 0.713
Ocbimv22007901m.g Octopus bimaculoides Ocbimv22007901m.g I 0.713
ACHR009800 Anopheles christyi ACHR009800 I 0.713
ACUA027429 Anopheles culicifacies ACUA027429 I 0.713
ADIR000964 Anopheles dirus ADIR000964 I 0.713
AFAF010901 Anopheles farauti AFAF010901 I 0.713
AFUN011579 Anopheles funestus AFUN011579 I 0.713
AMEC016969 Anopheles melas AMEC016969 I 0.713
AMEM003247 Anopheles merus AMEM003247 I 0.713
AMIN002123 Anopheles minimus AMIN002123 I 0.713
ASIS021176 Anopheles sinensis ASIS021176 I 0.713
LLOJ002076 Lutzomyia longipalpis LLOJ002076 I 0.713
pax9.L Xenopus laevis XB-GENE-864845 I 0.712
AMAM018366 Anopheles maculatus AMAM018366 I 0.710