D918_02290 (Trichuris suis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 D918_02290 T319175_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.655 0.342
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.655 0.342
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.655 0.342
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.655 0.342
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.655 0.342
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D918_02290 RFX 383 461

Links

Other RFX family TFs
Other Trichuris suis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SBAD_0000841501 Soboliphyme baturini SBAD_0000841501 N 0.714
EFV52546 Trichinella spiralis EFV52546 N 0.711
AACERI_AaceriAAL010W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL010W I 0.666
AGOS_AAL010W Ashbya gossypii AGOS_AAL010W I 0.666
GPUH_0001348601 Gongylonema pulchrum GPUH_0001348601 N 0.666
WUBG_06587 Wuchereria bancrofti WUBG_06587 N 0.665
TCLT_0000036201 Thelazia callipaeda TCLT_0000036201 N 0.664
OFLC_0000602701 Onchocerca flexuosa OFLC_0000602701 N 0.662
KLTH0H12144g Lachancea thermotolerans KLTH0H12144g I 0.660
TBLA_0C01490 Tetrapisispora blattae TBLA_0C01490 I 0.660
KLTH0H12144g Kluyveromyces thermotolerans KLTH0H12144g I 0.660
Kwal_214 Kluyveromyces waltii Kwal_214 I 0.660
ENSTSYG00000008562 Tarsius syrichta ENSTSYG00000008562 I 0.658
Kpol_457p14 Vanderwaltozyma polyspora Kpol_457p14 I 0.658
SAKL0D08734g Lachancea kluyveri SAKL0D08734g I 0.658
PAS_chr2-2_0153 Komagataella pastoris PAS_chr2-2_0153 I 0.657
TPHA_0B03750 Tetrapisispora phaffii TPHA_0B03750 I 0.657
XP_002492053.1 Pichia pastoris XP_002492053.1 I 0.657
SVUK_0000285501 Strongylus vulgaris SVUK_0000285501 N 0.657
ANCDUO_13967 Ancylostoma duodenale ANCDUO_13967 N 0.656
MGG_04000 Magnaporthe oryzae MGG_04000 I 0.655
TDEL_0B05980 Torulaspora delbrueckii TDEL_0B05980 I 0.655
THITE_2107553 Thielavia terrestris THITE_2107553 I 0.655
RFX1 Saccharomyces cerevisiae YLR176C D 0.655
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.655
14959_Multiple Saccharomyces mikatae 14959_Multiple I 0.655
16177_Multiple Saccharomyces paradoxus 16177_Multiple I 0.655
OESDEN_14901 Oesophagostomum dentatum OESDEN_14901 N 0.655
NCAS_0C04880 Naumovozyma castellii NCAS_0C04880 I 0.654
SOCG_01623 Schizosaccharomyces octosporus SOCG_01623 I 0.654
SPOG_03909 Schizosaccharomyces cryophilus SPOG_03909 I 0.654
Scas_Contig488.2 Saccharomyces castellii Scas_Contig488.2 I 0.654
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.653
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.653
SJAG_04839 Schizosaccharomyces japonicus SJAG_04839 I 0.653
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.652
KNAG_0I01300 Kazachstania naganishii KNAG_0I01300 I 0.652
SAPIO_CDS9685 Scedosporium apiospermum SAPIO_CDS9685 I 0.652
ZBAI_03427 Zygosaccharomyces bailii ZBAI_03427 I 0.652
ZBAI_08430 Zygosaccharomyces bailii ZBAI_08430 I 0.652
CTHT_0028340 Chaetomium thermophilum CTHT_0028340 I 0.651
EV44_g5273 Erysiphe necator EV44_g5273 I 0.651
LALA0_S03e09428g Lachancea lanzarotensis LALA0_S03e09428g I 0.651
NDAI_0G04240 Naumovozyma dairenensis NDAI_0G04240 I 0.651
NechaG49316 Fusarium solani NechaG49316 I 0.651
PMAA_084960 Talaromyces marneffei PMAA_084960 I 0.651
PVAR5_6603 Byssochlamys spectabilis PVAR5_6603 I 0.651
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.651
TriadG51678 Trichoplax adhaerens TriadG51678 I 0.651
TSTA_119980 Talaromyces stipitatus TSTA_119980 I 0.651
ZYRO0E04642g Zygosaccharomyces rouxii ZYRO0E04642g I 0.651
e_gw1.6.922.1 Nectria haematococca e_gw1.6.922.1 I 0.651
PMAA_084960 Penicillium marneffei PMAA_084960 I 0.651
NEUTE1DRAFT_119738 Neurospora tetrasperma NEUTE1DRAFT_119738 I 0.650
estExt_fgenesh2_pg.C_10713 Neurospora discreta estExt_fgenesh2_pg.C_10713 I 0.650
NCU06701 Neurospora crassa NCU06701 I 0.650