CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.012G176500
(
Gossypium raimondii
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Gorai.012G176500
T323518_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.012G176500.1
SBP
189
263
CQVEGCNLDLSSARDYHRKHKVCESHSKSPKVIVSGLERRFCQQCSRFHALSEFDVNKRSCRQRLSDHNARRRKP
Gorai.012G176500.2
SBP
189
263
CQVEGCNLDLSSARDYHRKHKVCESHSKSPKVIVSGLERRFCQQCSRFHALSEFDVNKRSCRQRLSDHNARRRKP
Gorai.012G176500.3
SBP
189
263
CQVEGCNLDLSSARDYHRKHKVCESHSKSPKVIVSGLERRFCQQCSRFHALSEFDVNKRSCRQRLSDHNARRRKP
Gorai.012G176500.4
SBP
189
263
CQVEGCNLDLSSARDYHRKHKVCESHSKSPKVIVSGLERRFCQQCSRFHALSEFDVNKRSCRQRLSDHNARRRKP
Links
Other
SBP
family TFs
Other
Gossypium raimondii
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GSMUA_Achr5G21990_001
Musa acuminata
GSMUA_Achr5G21990_001
N
0.920
GSMUA_Achr6G36010_001
Musa acuminata
GSMUA_Achr6G36010_001
N
0.910
TCM_008772
Theobroma cacao
TCM_008772
N
0.903
GSMUA_Achr10G02970_001
Musa acuminata
GSMUA_Achr10G02970_001
N
0.900
GSMUA_Achr3G05360_001
Musa acuminata
GSMUA_Achr3G05360_001
N
0.900
GSMUA_Achr9G14160_001
Musa acuminata
GSMUA_Achr9G14160_001
N
0.898
GLYMA18G00903
Glycine max
GLYMA18G00903
N
0.896
LjSGA_032871.1
Lotus japonicus
LjSGA_032871.1
N
0.889
GSMUA_Achr5G22630_001
Musa acuminata
GSMUA_Achr5G22630_001
N
0.887
Gorai.002G182700
Gossypium raimondii
Gorai.002G182700
N
0.887