Pavir.Ga01019 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Ga01019 T334672_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga01019.1.p Sox 24 95

Links

Other Sox family TFs
Other Panicum virgatum TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Gb00881 Panicum virgatum Pavir.Gb00881 N 0.732
Sb06g025440 Sorghum bicolor Sb06g025440 N 0.623
GRMZM2G145968 Zea mays GRMZM2G145968 N 0.594
Si011290m.g Setaria italica Si011290m.g N 0.478
Traes_2AL_020BC1DF2 Triticum aestivum Traes_2AL_020BC1DF2 N 0.469
Traes_2BL_3EF023231 Triticum aestivum Traes_2BL_3EF023231 N 0.469
MLOC_57354 Hordeum vulgare MLOC_57354 N 0.440
F775_06533 Aegilops tauschii F775_06533 N 0.436
Traes_2DL_6CACFD720 Triticum aestivum Traes_2DL_6CACFD720 N 0.436
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.434
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.428
BRADI5G18460 Brachypodium distachyon BRADI5G18460 N 0.428
LPERR04G17840 Leersia perrieri LPERR04G17840 N 0.428
OB04G28810 Oryza brachyantha OB04G28810 N 0.428
OBART04G21800 Oryza barthii OBART04G21800 N 0.428
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.428
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.428
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.428
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.428
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.428
OS04G0564600 Oryza sativa OS04G0564600 N 0.428
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.419
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.419
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.419
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.419
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.419
OB02G34710 Oryza brachyantha OB02G34710 N 0.419
OBART02G27340 Oryza barthii OBART02G27340 N 0.419
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.419
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.419
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.419
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.419
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.419
OS02G0670400 Oryza sativa OS02G0670400 N 0.419
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.419
Si018635m.g Setaria italica Si018635m.g N 0.419
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.419
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.419
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.417