XP_002163918.1 (Hydra magnipapillata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 XP_002163918.1 T335353_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.415 0.265
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.415 0.265
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002163918.1 Sox 502 550

Links

Other Sox family TFs
Other Hydra magnipapillata TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CAOG_02676 Capsaspora owczarzaki CAOG_02676 N 0.522
AMSG_09450 Thecamonas trahens AMSG_09450 N 0.511
CapteG178344 Capitella teleta CapteG178344 N 0.503
LotgiG105193 Lottia gigantea LotgiG105193 N 0.497
DAPPUDRAFT_306626 Daphnia pulex DAPPUDRAFT_306626 N 0.474
TRE_0001918901 Trichobilharzia regenti TRE_0001918901 N 0.473
SJAG_02223 Schizosaccharomyces japonicus SJAG_02223 N 0.468
GSTUM_00007488001 Tuber melanosporum GSTUM_00007488001 N 0.461
Sjc_0011880 Schistosoma japonicum Sjc_0011880 N 0.460
GLOINDRAFT_342259 Rhizophagus irregularis GLOINDRAFT_342259 I 0.458
Smp_004360 Schistosoma mansoni Smp_004360 N 0.453
SPOG_02196 Schizosaccharomyces cryophilus SPOG_02196 N 0.453
A_06553 Schistosoma haematobium A_06553 N 0.453
SMRZ_0002114501 Schistosoma margrebowiei SMRZ_0002114501 N 0.453
Moror_16065 Moniliophthora roreri Moror_16065 I 0.451
PLICRDRAFT_179042 Plicaturopsis crispa PLICRDRAFT_179042 I 0.445
GLOINDRAFT_347422 Rhizophagus irregularis GLOINDRAFT_347422 I 0.435
SOCG_00309 Schizosaccharomyces octosporus SOCG_00309 N 0.432
fgenesh2_pg.scaffold_5000103 Monosiga brevicollis fgenesh2_pg.scaffold_5000103 N 0.432
SPPG_01639 Spizellomyces punctatus SPPG_01639 I 0.431
nRc.2.0.1.g26827 Romanomermis culicivorax nRc.2.0.1.g26827 N 0.426
GSMUA_Achr4G31310_001 Musa acuminata GSMUA_Achr4G31310_001 I 0.425
GSMUA_Achr6G31080_001 Musa acuminata GSMUA_Achr6G31080_001 I 0.425
GSMUA_Achr7G07830_001 Musa acuminata GSMUA_Achr7G07830_001 I 0.425
VIT_08s0032g01110 Vitis vinifera VIT_08s0032g01110 I 0.425
Cflo_06149--XP_001122099.1_APIME Camponotus floridanus Cflo_06149--XP_001122099.1_APIME N 0.424
Cla010239 Citrullus lanatus Cla010239 I 0.424
EMIHUDRAFT_117867 Emiliania huxleyi EMIHUDRAFT_117867 I 0.422
SapurV1A.0258s0090 Salix purpurea SapurV1A.0258s0090 I 0.422
PTSG_02585 Salpingoeca rosetta PTSG_02585 N 0.421
GSMUA_Achr3G15060_001 Musa acuminata GSMUA_Achr3G15060_001 I 0.421
GSMUA_Achr8G04750_001 Musa acuminata GSMUA_Achr8G04750_001 I 0.421
GSMUA_Achr8G26600_001 Musa acuminata GSMUA_Achr8G26600_001 I 0.421
CGI_10027770 Crassostrea gigas CGI_10027770 N 0.420
ACEP23223 Atta cephalotes ACEP23223 N 0.418
ENSPMAG00000002918 Petromyzon marinus ENSPMAG00000002918 N 0.417
POPTR_0016s06760 Populus trichocarpa POPTR_0016s06760 I 0.417
YAB5 Arabidopsis thaliana AT2G26580 D 0.415
BGIOSGA013223 Oryza indica BGIOSGA013223 I 0.415
BGIOSGA037817 Oryza indica BGIOSGA037817 I 0.415
Bo3g041840 Brassica oleracea Bo3g041840 I 0.415
Bra000538 Brassica rapa Bra000538 I 0.415
BRADI1G13570 Brachypodium distachyon BRADI1G13570 I 0.415
BRADI4G01300 Brachypodium distachyon BRADI4G01300 I 0.415
F775_28710 Aegilops tauschii F775_28710 I 0.415
YAB5 Arabidopsis lyrata fgenesh2_kg.4__584__AT2G26580.2 I 0.415
GLYMA13G22620 Glycine max GLYMA13G22620 I 0.415
GLYMA17G12200 Glycine max GLYMA17G12200 I 0.415
GRMZM2G085873 Zea mays GRMZM2G085873 I 0.415
GRMZM2G141955 Zea mays GRMZM2G141955 I 0.415
GSMUA_Achr2G12850_001 Musa acuminata GSMUA_Achr2G12850_001 I 0.415
GSMUA_Achr7G01330_001 Musa acuminata GSMUA_Achr7G01330_001 I 0.415
LPERR03G22960 Leersia perrieri LPERR03G22960 I 0.415
MLOC_66260 Hordeum vulgare MLOC_66260 I 0.415
MLOC_70676 Hordeum vulgare MLOC_70676 I 0.415
MTR_4g114730 Medicago truncatula MTR_4g114730 I 0.415
OB03G35470 Oryza brachyantha OB03G35470 I 0.415
OB12G26050 Oryza brachyantha OB12G26050 I 0.415
OBART03G27740 Oryza barthii OBART03G27740 I 0.415
OBART12G19190 Oryza barthii OBART12G19190 I 0.415
OGLUM03G28370 Oryza glumaepatula OGLUM03G28370 I 0.415
OGLUM12G20870 Oryza glumaepatula OGLUM12G20870 I 0.415
OLONG_018568 Oryza longistaminata OLONG_018568 I 0.415
OMERI12G13460 Oryza meridionalis OMERI12G13460 I 0.415
ONIVA02G03100 Oryza nivara ONIVA02G03100 I 0.415
ONIVA03G28660 Oryza nivara ONIVA03G28660 I 0.415
OPUNC03G25290 Oryza punctata OPUNC03G25290 I 0.415
OPUNC12G17340 Oryza punctata OPUNC12G17340 I 0.415
ORGLA12G0165000 Oryza glaberrima ORGLA12G0165000 I 0.415
ORUFI03G28820 Oryza rufipogon ORUFI03G28820 I 0.415
ORUFI12G21410 Oryza rufipogon ORUFI12G21410 I 0.415
YAB2 Oryza sativa OS03G0650000 I 0.415
YAB6 Oryza sativa OS12G0621100 I 0.415
PGSC0003DMG400030904 Solanum tuberosum PGSC0003DMG400030904 I 0.415
POPTR_0006s06700 Populus trichocarpa POPTR_0006s06700 I 0.415
POPTR_0018s12990 Populus trichocarpa POPTR_0018s12990 I 0.415
PRUPE_ppa012028mg Prunus persica PRUPE_ppa012028mg I 0.415
Sb08g022030 Sorghum bicolor Sb08g022030 I 0.415
Si023308m.g Setaria italica Si023308m.g I 0.415
Solyc07g008180.2 Solanum lycopersicum Solyc07g008180.2 I 0.415
TCM_038105 Theobroma cacao TCM_038105 I 0.415
Traes_5AL_EB97D69D7 Triticum aestivum Traes_5AL_EB97D69D7 I 0.415
Traes_5AS_31C2540C0 Triticum aestivum Traes_5AS_31C2540C0 I 0.415
Traes_5BL_4DEC298F9 Triticum aestivum Traes_5BL_4DEC298F9 I 0.415
Traes_5BS_A782F7510 Triticum aestivum Traes_5BS_A782F7510 I 0.415
Traes_5DL_0E369E1FC Triticum aestivum Traes_5DL_0E369E1FC I 0.415
Traes_5DS_268147383 Triticum aestivum Traes_5DS_268147383 I 0.415
TRIUR3_18590 Triticum urartu TRIUR3_18590 I 0.415
TRIUR3_27402 Triticum urartu TRIUR3_27402 I 0.415
YAB5 Vitis vinifera VIT_11s0016g05590 I 0.415
Ca_06681 Cicer arietinum Ca_06681 I 0.415
Pm027559 Prunus mume Pm027559 I 0.415
29927.m000626 Ricinus communis 29927.m000626 I 0.415
cassava13509.valid.m1 Manihot esculenta cassava13509.valid.m1 I 0.415
cassava13510.valid.m1 Manihot esculenta cassava13510.valid.m1 I 0.415
cassava33847.m1 Manihot esculenta cassava33847.m1 I 0.415
mgf010765m Mimulus guttatus mgf010765m I 0.415
mgf015972m Mimulus guttatus mgf015972m I 0.415
Aquca_020_00105 Aquilegia coerulea Aquca_020_00105 I 0.415
Cagra.11302s0003 Capsella grandiflora Cagra.11302s0003 I 0.415
Carubv10024208m.g Capsella rubella Carubv10024208m.g I 0.415
Ciclev10009560m.g Citrus clementina Ciclev10009560m.g I 0.415
evm.TU.supercontig_104.5 Carica papaya evm.TU.supercontig_104.5 I 0.415
evm.TU.supercontig_46.14 Carica papaya evm.TU.supercontig_46.14 I 0.415
gene31056-v1.0-hybrid Fragaria vesca gene31056-v1.0-hybrid I 0.415
Gorai.001G042700 Gossypium raimondii Gorai.001G042700 I 0.415
Gorai.009G016700 Gossypium raimondii Gorai.009G016700 I 0.415
Gorai.010G062900 Gossypium raimondii Gorai.010G062900 I 0.415
MDP0000255415 Malus domestica MDP0000255415 I 0.415
orange1.1g028980m.g Citrus sinensis orange1.1g028980m.g I 0.415
Pavir.Ca02862 Panicum virgatum Pavir.Ca02862 I 0.415
Pavir.Cb00070 Panicum virgatum Pavir.Cb00070 I 0.415
SapurV1A.0034s0500 Salix purpurea SapurV1A.0034s0500 I 0.415
SapurV1A.1100s0080 Salix purpurea SapurV1A.1100s0080 I 0.415
Thhalv10017320m.g Eutrema salsugineum Thhalv10017320m.g I 0.415
PK09461.1 Cannabis sativa PK09461.1 I 0.415