CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra018126
(
Brassica rapa
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
Bra018126
T343780_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra018126.1-P
TCP
28
103
FQLLGKRDPDDNNQQQQQQQQPSPSSSSSLFSLHQHQQLSQTQPQPQQQKPQPQKDLQVTQEETAVVVAKKPPLKR
Bra018126.1-P
TCP
104
292
ASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSSMSLPSHYRNAASTFSPNNIFSPSLLQQQQQRSGGGGFLHPHHHLQGRATTSSLFPGIDNFTPTTSFLNFHNPTKQEGDQDSEELSPDKKRRLQTTSDLHHQHDQIGGYT
Bra018126.1-P
TCP
346
456
TFPSINTAAAALYRSSVSGVSGGAVSSGLHFMNFAAPMAFLTGQQLATSSNHEINEDNNNNEGGRSDGGDHHNTQRHHHQQQQQQHHHHNILSGLNQYGRQVSGESQASDS
Links
Other
TCP
family TFs
Other
Brassica rapa
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GSMUA_Achr10G09730_001
Musa acuminata
GSMUA_Achr10G09730_001
N
0.904
Cagra.1659s0005
Capsella grandiflora
Cagra.1659s0005
N
0.898
Pm003922
Prunus mume
Pm003922
N
0.881
Pavir.Ea03897
Panicum virgatum
Pavir.Ea03897
N
0.872
VIT_12s0035g00690
Vitis vinifera
VIT_12s0035g00690
N
0.863
Carubv10017043m.g
Capsella rubella
Carubv10017043m.g
N
0.862
PGSC0003DMG400024928
Solanum tuberosum
PGSC0003DMG400024928
N
0.857
SELMODRAFT_441321
Selaginella moellendorffii
SELMODRAFT_441321
N
0.851
evm.TU.supercontig_66.26
Carica papaya
evm.TU.supercontig_66.26
N
0.851
Bo9g052090
Brassica oleracea
Bo9g052090
N
0.849
SELMODRAFT_429489
Selaginella moellendorffii
SELMODRAFT_429489
N
0.849
Sb05g004800
Sorghum bicolor
Sb05g004800
N
0.845
OBART01G42290
Oryza barthii
OBART01G42290
N
0.839
GLYMA16G05840
Glycine max
GLYMA16G05840
N
0.830