CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_66.26
(
Carica papaya
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
evm.TU.supercontig_66.26
T344827_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_66.26
TCP
90
291
RPSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGANISAPPSKSAPLSFHSASLSLYDGNGSSAENQARKFLNSPATMLGFHPHQLYPQILSSDAASMRINNASDTTSSSLTRPYREDLFKEQSPQQHGDPAAENSPGAAKSTGRTGSVQEREPGSVR
evm.model.supercontig_66.26
TCP
351
434
VQFGSMLVQQPMGGQQLGLGVTESNMGILGGGVGGYGGSRVGLAMNLEQHQQQQHHHHHHHQQQHENQTQASDSGDDDENPTGS
Links
Other
TCP
family TFs
Other
Carica papaya
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400024928
Solanum tuberosum
PGSC0003DMG400024928
N
0.970
SELMODRAFT_429489
Selaginella moellendorffii
SELMODRAFT_429489
N
0.963
SELMODRAFT_441321
Selaginella moellendorffii
SELMODRAFT_441321
N
0.963
Bo9g052090
Brassica oleracea
Bo9g052090
N
0.960
GLYMA16G05840
Glycine max
GLYMA16G05840
N
0.952
evm.TU.supercontig_70.118
Carica papaya
evm.TU.supercontig_70.118
N
0.941
Pavir.Fa00111
Panicum virgatum
Pavir.Fa00111
N
0.938
BRADI4G35670
Brachypodium distachyon
BRADI4G35670
N
0.930
GSMUA_Achr6G17840_001
Musa acuminata
GSMUA_Achr6G17840_001
N
0.930
Traes_5BL_B94C45A8F
Triticum aestivum
Traes_5BL_B94C45A8F
N
0.930
Cla007052
Citrullus lanatus
Cla007052
N
0.926
TCP8
Arabidopsis thaliana
AT1G58100
D
0.910
Bra018126
Brassica rapa
Bra018126
N
0.851
Sb08g004610
Sorghum bicolor
Sb08g004610
N
0.845
Carubv10010909m.g
Capsella rubella
Carubv10010909m.g
N
0.842
ORUFI02G26600
Oryza rufipogon
ORUFI02G26600
N
0.840