Pavir.Ab00418 (Panicum virgatum)
Whirly

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08536 (Whirly) IPR013742 Pavir.Ab00418 T350644_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab00418.1.p Whirly 54 189

Links

Other Whirly family TFs
Other Panicum virgatum TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si018290m.g Setaria italica Si018290m.g N 0.971
Pavir.Aa03265 Panicum virgatum Pavir.Aa03265 N 0.949
Traes_6BS_0A692E6F6 Triticum aestivum Traes_6BS_0A692E6F6 N 0.926
Traes_6AS_A92DEAA15 Triticum aestivum Traes_6AS_A92DEAA15 N 0.919
Traes_6DS_1FC471B7F Triticum aestivum Traes_6DS_1FC471B7F N 0.919
OLONG_017077 Oryza longistaminata OLONG_017077 N 0.904
OPUNC02G03720 Oryza punctata OPUNC02G03720 N 0.904
LPERR02G03890 Leersia perrieri LPERR02G03890 N 0.904
OGLUM02G04370 Oryza glumaepatula OGLUM02G04370 N 0.897
OB02G13770 Oryza brachyantha OB02G13770 N 0.897
ORUFI02G04590 Oryza rufipogon ORUFI02G04590 N 0.897
GRMZM2G012262 Zea mays GRMZM2G012262 N 0.897
OS02G0158400 Oryza sativa OS02G0158400 N 0.897
OBART02G04450 Oryza barthii OBART02G04450 N 0.897
ORGLA02G0041200 Oryza glaberrima ORGLA02G0041200 N 0.897
ONIVA02G04450 Oryza nivara ONIVA02G04450 N 0.897
BGIOSGA007096 Oryza indica BGIOSGA007096 N 0.897
Sb04g004060 Sorghum bicolor Sb04g004060 N 0.890
BRADI3G04450 Brachypodium distachyon BRADI3G04450 N 0.882
F775_24520 Aegilops tauschii F775_24520 N 0.706
TRIUR3_19131 Triticum urartu TRIUR3_19131 N 0.706