RSC30 (Saccharomyces cerevisiae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 YHR056C T388349_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RSC30
M00086_2.00		 Saccharomyces cerevisiae
NGCGCGCGSN
NSCGCGCGCN		 PBM
Badis et al.(2008)
RSC30_2087		 (Direct) (Direct)
RSC30
M01580_2.00		 Saccharomyces cerevisiae
NNDCGSVNN
NNBSCGHNN		 PBM
Zhu et al.(2009)
Rsc30		 (Direct) (Direct)
RSC30
M07513_2.00		 Saccharomyces cerevisiae
VSCGCGCS
SGCGCGSB		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0375.1		 (Direct) (Direct)
RSC30
M08663_2.00		 Saccharomyces cerevisiae
HNHVHCSCGCGCGSGNDVSVN
NBSBHNCSCGCGCGSGDBDND		 Misc
DeBoer et al.(2011)
YHR056C_857		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RSC3
M00082_2.00 		Saccharomyces cerevisiae
GCGCGCGG
CCGCGCGC		 PBM
Badis et al.(2008)
RSC3_2035 		0.537 0.816
RSC3
M01576_2.00 		Saccharomyces cerevisiae
NNNNNSCGNN
NNCGSNNNNN		 PBM
Zhu et al.(2009)
Rsc3 		0.537 0.816
RSC3
M07509_2.00 		Saccharomyces cerevisiae
NNVCGCG
CGCGBNN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0374.1 		0.537 0.816
RSC3
M08655_2.00 		Saccharomyces cerevisiae
NNVCGCG
CGCGBNN		 Misc
DeBoer et al.(2011)
YDR303C_580 		0.537 0.816
For this family, TFs with SR scores > 0.537 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00086_2.00 Zinc cluster 12 50
M01580_2.00 Zinc cluster 13 51

DNA Binding Domains

Protein ID Domain From To Sequence
YHR056C Zinc cluster 13 51

Links

Other Zinc cluster family TFs
Other Saccharomyces cerevisiae TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SU7_1441 Saccharomyces arboricola SU7_1441 I 0.683
10181_Multiple Saccharomyces paradoxus 10181_Multiple I 0.683
10337_Multiple Saccharomyces bayanus 10337_Multiple I 0.683
9825_Multiple Saccharomyces mikatae 9825_Multiple I 0.683
KAFR_0D04590 Kazachstania africana KAFR_0D04590 I 0.562
TBLA_0A02950 Tetrapisispora blattae TBLA_0A02950 I 0.550
AACERI_AaceriAAL057C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL057C I 0.539
AGOS_AAL057C Ashbya gossypii AGOS_AAL057C I 0.539
Kpol_1023p41 Vanderwaltozyma polyspora Kpol_1023p41 I 0.539
Kpol_1005p2 Vanderwaltozyma polyspora Kpol_1005p2 I 0.537
NCAS_0F02700 Naumovozyma castellii NCAS_0F02700 I 0.537
NDAI_0C04170 Naumovozyma dairenensis NDAI_0C04170 I 0.537
SKUD_196709 Saccharomyces kudriavzevii SKUD_196709 I 0.537
SU7_2665 Saccharomyces arboricola SU7_2665 I 0.537
RSC3 Saccharomyces cerevisiae YDR303C D 0.537
Scas_Contig588.11 Saccharomyces castellii Scas_Contig588.11 I 0.537
4855_Multiple Saccharomyces paradoxus 4855_Multiple I 0.537
4894_YDR303C Saccharomyces bayanus 4894_YDR303C I 0.537