16481_YMR019W (Saccharomyces mikatae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 16481_YMR019W T390782_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STB4
M00100_2.00 		Saccharomyces cerevisiae
NWCGGRWNNN
NNNWYCCGWN		 PBM
Badis et al.(2008)
STB4_2129 		0.643 0.895
STB4
M00927_2.00 		Saccharomyces cerevisiae
NTTCSGAKMN
NKMTCSGAAN		 PBM
Gordan et al.(2011)
Stb4 		0.643 0.895
STB4
M07527_2.00 		Saccharomyces cerevisiae
YTCGGAA
TTCCGAR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0391.1 		0.643 0.895
STB4
M08686_2.00 		Saccharomyces cerevisiae
YTCGGAA
TTCCGAR		 Misc
DeBoer et al.(2011)
YMR019W_483 		0.643 0.895
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
16481_YMR019W Zinc cluster 33 72

Links

Other Zinc cluster family TFs
Other Saccharomyces mikatae TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SU7_2505 Saccharomyces arboricola SU7_2505 I 0.666
STB4 Saccharomyces cerevisiae YMR019W D 0.643
17249_YMR019W Saccharomyces paradoxus 17249_YMR019W I 0.619
17664_YMR019W Saccharomyces bayanus 17664_YMR019W I 0.619
SKUD_205412 Saccharomyces kudriavzevii SKUD_205412 I 0.618
ZYRO0E06270g Zygosaccharomyces rouxii ZYRO0E06270g N 0.553