CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10005549m.g
(
Citrus clementina
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Ciclev10005549m.g
T007962_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK08602.1
M01098_2.00
Cannabis sativa
NYCACCGCYN
NRGCGGTGRN
PBM
Lambert et al.(2019)
pTH11421
0.805
0.960
DREB2F
M06630_2.00
Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR
Dap-seq
OMalley et al.(2016)
AT3G57600_col_a
0.775
0.920
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.685
0.780
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH
DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.681
0.780
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10005549m
AP2
28
79
CQYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGP
Links
Other
AP2
family TFs
Other
Citrus clementina
TFs
118 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy