CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMTR_s00021p00223240
(
Amborella trichopoda
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AMTR_s00021p00223240
T000354_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF023
M06560_2.00
Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH
Dap-seq
OMalley et al.(2016)
AT1G01250_col_a
0.749
0.880
ERF023
M06561_2.00
Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD
Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a
0.749
0.880
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.677
0.740
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.677
0.740
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ERN14075
AP2
56
107
PVFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPTAEMAAHAYDVAALNLKGR
Links
Other
AP2
family TFs
Other
Amborella trichopoda
TFs
88 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy