Bo1g004940 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo1g004940 T000713_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.815 0.980
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.814 0.940
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.814 0.940
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.813 0.920
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.813 0.920
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.805 0.960
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.805 0.960
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.805 0.960
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.805 0.960
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.760 0.920
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.760 0.920
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.728 0.860
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.728 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g004940.1 AP2 27 78

Links

Other AP2 family TFs
Other Brassica oleracea TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.815
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.728
ERF008 Arabidopsis thaliana AT2G23340 D 0.805
ERF011 Arabidopsis thaliana AT3G50260 D 0.813
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.760
ERF010 Arabidopsis thaliana AT5G67190 D 0.814
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.733
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.776
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.815
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.815
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.773
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.814
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.791
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.793
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.814
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.813
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.814
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.815
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.813
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.773
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.815
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.815
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.815
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.773
mgf025363m Mimulus guttatus mgf025363m I 0.766
mgf021115m Mimulus guttatus mgf021115m I 0.814
mgf006561m Mimulus guttatus mgf006561m I 0.808
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.767
Ca_01556 Cicer arietinum Ca_01556 I 0.731
Ca_02170 Cicer arietinum Ca_02170 I 0.770
Cla014175 Citrullus lanatus Cla014175 I 0.754
Cla020550 Citrullus lanatus Cla020550 I 0.738
Cla020961 Citrullus lanatus Cla020961 I 0.783
Cla022937 Citrullus lanatus Cla022937 I 0.781
28718.m000038 Ricinus communis 28718.m000038 I 0.799
30170.m013843 Ricinus communis 30170.m013843 I 0.791
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.775
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.791
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.791
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.754
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.783
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.738
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.781
mgf000289m Mimulus guttatus mgf000289m I 0.779
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.760
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.789
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.737
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.752
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.737
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.752
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.793
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.791
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.775
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.760
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.760
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.791
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.779
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.814
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.815
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.751
PK15612.1 Cannabis sativa PK15612.1 I 0.772
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.772
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.733
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.789
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.800
MDP0000756341 Malus domestica MDP0000756341 I 0.758
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.800
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.781
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.783
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.783
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.800
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.777
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.801
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.800
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.770
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.800
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.783
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.770
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.749
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.793
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.791
MDP0000125673 Malus domestica MDP0000125673 I 0.801
MDP0000179962 Malus domestica MDP0000179962 I 0.801
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.761
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.686
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.772
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.771
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.771
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.771
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.772
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.783
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.758
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.783
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.720
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.737
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.745
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.737
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.779
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.762
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.778
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.723
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.743
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.760
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.813
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.815
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.737
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.737
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.752
Bo4g151460 Brassica oleracea Bo4g151460 I 0.815
Bo7g063980 Brassica oleracea Bo7g063980 I 0.814
Bo7g118430 Brassica oleracea Bo7g118430 I 0.815
Bo8g079660 Brassica oleracea Bo8g079660 I 0.814
Bo9g020380 Brassica oleracea Bo9g020380 I 0.808
Bra011744 Brassica rapa Bra011744 I 0.803
Bra012140 Brassica rapa Bra012140 I 0.793
Bra014056 Brassica rapa Bra014056 I 0.783
Bra017811 Brassica rapa Bra017811 I 0.815
Bra032173 Brassica rapa Bra032173 I 0.815
Bra036061 Brassica rapa Bra036061 I 0.814
Bra037124 Brassica rapa Bra037124 I 0.808
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.752
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.737
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.760
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.746
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.813
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.779
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.778
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.791
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.775
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.775
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.791
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.758
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.799
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.737
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.752
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.730
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.815
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.814
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.779
TCM_000669 Theobroma cacao TCM_000669 I 0.800
TCM_033791 Theobroma cacao TCM_033791 I 0.781
OS06G0166400 Oryza sativa OS06G0166400 I 0.752
OS04G0648900 Oryza sativa OS04G0648900 I 0.737
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.752
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.775
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.791
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.737
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.752
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.738
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.772
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.731
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.770
OBART06G04460 Oryza barthii OBART06G04460 I 0.752
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.737
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.752
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.737
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.737
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.752
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.752
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.737
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.752
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.738