Bo3g168910 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo3g168910 T000798_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.792 0.980
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.792 0.980
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.792 0.980
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.705 0.816
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.705 0.816
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.699 0.816
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.687 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g168910.1 AP2 133 184

Links

Other AP2 family TFs
Other Brassica oleracea TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra011529 Brassica rapa Bra011529 I 0.792
Bo7g116860 Brassica oleracea Bo7g116860 I 0.792
Bostr.7867s1298 Boechera stricta Bostr.7867s1298 I 0.792
Cagra.6777s0012 Capsella grandiflora Cagra.6777s0012 I 0.792
Thhalv10027524m.g Eutrema salsugineum Thhalv10027524m.g I 0.792
Carubv10007825m.g Capsella rubella Carubv10007825m.g I 0.792
Bo1g007330 Brassica oleracea Bo1g007330 I 0.792
RRTF1 Arabidopsis lyrata scaffold_700692.1 I 0.792
ERF109 Arabidopsis thaliana AT4G34410 D 0.792
Bra034624 Brassica rapa Bra034624 I 0.770
Bra017656 Brassica rapa Bra017656 I 0.766
GLYMA07G13980 Glycine max GLYMA07G13980 I 0.715
29801.m003186 Ricinus communis 29801.m003186 I 0.715
Bra039658 Brassica rapa Bra039658 I 0.715
Cucsa.219890 Cucumis sativus Cucsa.219890 I 0.713
evm.TU.supercontig_62.11 Carica papaya evm.TU.supercontig_62.11 I 0.713
Cla016262 Citrullus lanatus Cla016262 I 0.713
MDP0000175375 Malus domestica MDP0000175375 I 0.712
Pavir.J19559 Panicum virgatum Pavir.J19559 I 0.711
LPERR08G14810 Leersia perrieri LPERR08G14810 I 0.711
Solyc10g050970.1 Solanum lycopersicum Solyc10g050970.1 I 0.708
PK15705.1 Cannabis sativa PK15705.1 I 0.707
Gorai.008G025100 Gossypium raimondii Gorai.008G025100 I 0.706
cassava38228.valid.m1 Manihot esculenta cassava38228.valid.m1 I 0.706
TCM_007061 Theobroma cacao TCM_007061 I 0.706
A4F249_TOBAC Nicotiana tabacum A4F249_TOBAC D 0.705
A4F248_TOBAC Nicotiana tabacum A4F248_TOBAC D 0.705
GLYMA08G15350 Glycine max GLYMA08G15350 I 0.704
MDP0000890854 Malus domestica MDP0000890854 I 0.704
PRUPE_ppa017002mg Prunus persica PRUPE_ppa017002mg I 0.703
BRADI3G38140 Brachypodium distachyon BRADI3G38140 I 0.703
Pm021321 Prunus mume Pm021321 I 0.701
PRUPE_ppa023235mg Prunus persica PRUPE_ppa023235mg I 0.701
Ciclev10028930m.g Citrus clementina Ciclev10028930m.g I 0.701
ONIVA08G19930 Oryza nivara ONIVA08G19930 I 0.699
LOC_Os08g36920 Oryza sativa LOC_Os08g36920 D 0.699
OLONG_013554 Oryza longistaminata OLONG_013554 I 0.699
OS08G0474000 Oryza sativa OS08G0474000 I 0.699
Si014237m.g Setaria italica Si014237m.g I 0.699
OPUNC08G15760 Oryza punctata OPUNC08G15760 I 0.699
OGLUM08G18720 Oryza glumaepatula OGLUM08G18720 I 0.699
Pm026408 Prunus mume Pm026408 I 0.698
Eucgr.B03559 Eucalyptus grandis Eucgr.B03559 I 0.698
Bra006195 Brassica rapa Bra006195 I 0.698
Bo3g009120 Brassica oleracea Bo3g009120 I 0.698
evm.TU.supercontig_38.79 Carica papaya evm.TU.supercontig_38.79 I 0.697
OB08G25030 Oryza brachyantha OB08G25030 I 0.696
Gorai.013G043700 Gossypium raimondii Gorai.013G043700 I 0.696
SapurV1A.0643s0230 Salix purpurea SapurV1A.0643s0230 I 0.696
SapurV1A.2778s0010 Salix purpurea SapurV1A.2778s0010 I 0.696
POPTR_0270s00200 Populus trichocarpa POPTR_0270s00200 I 0.696
POPTR_0004s14840 Populus trichocarpa POPTR_0004s14840 I 0.696
Pavir.Fa00656 Panicum virgatum Pavir.Fa00656 I 0.696
POPTR_0009s10470 Populus trichocarpa POPTR_0009s10470 I 0.696
Gorai.005G238000 Gossypium raimondii Gorai.005G238000 I 0.696
Sb07g023030 Sorghum bicolor Sb07g023030 I 0.694
GRMZM2G369472 Zea mays GRMZM2G369472 I 0.694
MDP0000254227 Malus domestica MDP0000254227 I 0.693
MTR_4g086220 Medicago truncatula MTR_4g086220 I 0.693
Lus10014054.g Linum usitatissimum Lus10014054.g I 0.693
Eucgr.H01659 Eucalyptus grandis Eucgr.H01659 I 0.692
chr1.LjT14I13.10.nd Lotus japonicus chr1.LjT14I13.10.nd I 0.692
GLYMA07G33511 Glycine max GLYMA07G33511 I 0.692
Ca_06446 Cicer arietinum Ca_06446 I 0.692
orange1.1g043184m.g Citrus sinensis orange1.1g043184m.g I 0.692
Ciclev10005787m.g Citrus clementina Ciclev10005787m.g I 0.692
Bo9g167820 Brassica oleracea Bo9g167820 I 0.691
PGSC0003DMG400025797 Solanum tuberosum PGSC0003DMG400025797 I 0.690
Solyc01g108240.2 Solanum lycopersicum Solyc01g108240.2 I 0.690
GLYMA18G51680 Glycine max GLYMA18G51680 I 0.690
GLYMA08G28835 Glycine max GLYMA08G28835 I 0.690
Traes_5BL_F5D379AFC Triticum aestivum Traes_5BL_F5D379AFC I 0.689
LPERR09G09240 Leersia perrieri LPERR09G09240 I 0.688
TCM_008334 Theobroma cacao TCM_008334 I 0.688
Gorai.005G197100 Gossypium raimondii Gorai.005G197100 I 0.688
Carubv10027012m.g Capsella rubella Carubv10027012m.g I 0.687
Bo3g109240 Brassica oleracea Bo3g109240 I 0.687
TCM_000606 Theobroma cacao TCM_000606 I 0.687
OMERI08G16840 Oryza meridionalis OMERI08G16840 I 0.687
ERF113 Arabidopsis thaliana AT5G13330 D 0.687
Bo2g161710 Brassica oleracea Bo2g161710 I 0.687
Carubv10001831m.g Capsella rubella Carubv10001831m.g I 0.687
Bostr.26833s0047 Boechera stricta Bostr.26833s0047 I 0.687
BGIOSGA029071 Oryza indica BGIOSGA029071 I 0.687
Bostr.2902s0068 Boechera stricta Bostr.2902s0068 I 0.687
Thhalv10005416m.g Eutrema salsugineum Thhalv10005416m.g I 0.687
Cagra.4553s0019 Capsella grandiflora Cagra.4553s0019 I 0.687
ERF114 Arabidopsis thaliana AT5G61890 I 0.687
Bo2g011200 Brassica oleracea Bo2g011200 I 0.687
Rap2.6L Arabidopsis lyrata fgenesh2_kg.6__1285__AT5G13330.1 I 0.687
Bra029302 Brassica rapa Bra029302 I 0.687
Bra019622 Brassica rapa Bra019622 I 0.687
scaffold_802838.1 Arabidopsis lyrata scaffold_802838.1 I 0.687
Bra023404 Brassica rapa Bra023404 I 0.687
Thhalv10014575m.g Eutrema salsugineum Thhalv10014575m.g I 0.687
ORGLA08G0225800 Oryza glaberrima ORGLA08G0225800 I 0.687
MDP0000390121 Malus domestica MDP0000390121 I 0.686
Aquca_023_00168 Aquilegia coerulea Aquca_023_00168 I 0.686
PGSC0003DMG400023593 Solanum tuberosum PGSC0003DMG400023593 I 0.686
MDP0000317932 Malus domestica MDP0000317932 I 0.686
AMTR_s00010p00099690 Amborella trichopoda AMTR_s00010p00099690 I 0.686
GLYMA03G23330 Glycine max GLYMA03G23330 I 0.686
GLYMA16G08683 Glycine max GLYMA16G08683 I 0.686
AMTR_s00017p00232330 Amborella trichopoda AMTR_s00017p00232330 I 0.686
AMTR_s00016p00092590 Amborella trichopoda AMTR_s00016p00092590 I 0.686
MDP0000316694 Malus domestica MDP0000316694 I 0.686
Cucsa.101370 Cucumis sativus Cucsa.101370 I 0.686
Pm007084 Prunus mume Pm007084 I 0.686
Solyc04g012050.2 Solanum lycopersicum Solyc04g012050.2 I 0.686
PRUPE_ppa011097mg Prunus persica PRUPE_ppa011097mg I 0.686
AMTR_s00010p00098700 Amborella trichopoda AMTR_s00010p00098700 I 0.685
OMERI09G10200 Oryza meridionalis OMERI09G10200 I 0.685
Solyc02g090790.1 Solanum lycopersicum Solyc02g090790.1 I 0.685
GSMUA_Achr8G08000_001 Musa acuminata GSMUA_Achr8G08000_001 I 0.685
OB09G19290 Oryza brachyantha OB09G19290 I 0.685
Bra008835 Brassica rapa Bra008835 I 0.685
GSMUA_Achr6G18020_001 Musa acuminata GSMUA_Achr6G18020_001 I 0.685
OPUNC09G11150 Oryza punctata OPUNC09G11150 I 0.685
Cla008608 Citrullus lanatus Cla008608 I 0.685
Sb08g004260 Sorghum bicolor Sb08g004260 I 0.684
SapurV1A.0627s0010 Salix purpurea SapurV1A.0627s0010 I 0.683
SapurV1A.0471s0080 Salix purpurea SapurV1A.0471s0080 I 0.683
SapurV1A.0340s0060 Salix purpurea SapurV1A.0340s0060 I 0.683
Sb07g025843 Sorghum bicolor Sb07g025843 I 0.683
gene24044-v1.0-hybrid Fragaria vesca gene24044-v1.0-hybrid I 0.683
MLOC_10878 Hordeum vulgare MLOC_10878 I 0.683
BGIOSGA036561 Oryza indica BGIOSGA036561 I 0.682
MTR_4g086165 Medicago truncatula MTR_4g086165 I 0.682
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.682
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.682
ONIVA12G03810 Oryza nivara ONIVA12G03810 I 0.682
Gorai.008G075600 Gossypium raimondii Gorai.008G075600 I 0.682
OPUNC12G04190 Oryza punctata OPUNC12G04190 I 0.682
OGLUM12G04880 Oryza glumaepatula OGLUM12G04880 I 0.682
TCM_005203 Theobroma cacao TCM_005203 I 0.682
OBART12G04120 Oryza barthii OBART12G04120 I 0.682
ORUFI12G04720 Oryza rufipogon ORUFI12G04720 I 0.682
Pavir.J28880 Panicum virgatum Pavir.J28880 I 0.681
cassava16956.m1 Manihot esculenta cassava16956.m1 I 0.681
30128.m008556 Ricinus communis 30128.m008556 I 0.681
cassava14904.m1 Manihot esculenta cassava14904.m1 I 0.681
cassava16948.m1 Manihot esculenta cassava16948.m1 I 0.681
MTR_7g020980 Medicago truncatula MTR_7g020980 I 0.681
PK12040.1 Cannabis sativa PK12040.1 I 0.681
RRTF1 Vitis vinifera VIT_03s0063g00460 I 0.681
Gorai.012G125700 Gossypium raimondii Gorai.012G125700 I 0.681
GSMUA_Achr3G06960_001 Musa acuminata GSMUA_Achr3G06960_001 I 0.681
Si013986m.g Setaria italica Si013986m.g I 0.681
MTR_4g086160 Medicago truncatula MTR_4g086160 I 0.680
SapurV1A.0499s0150 Salix purpurea SapurV1A.0499s0150 I 0.680
chr4.CM0227.40.nd Lotus japonicus chr4.CM0227.40.nd I 0.680
POPTR_0001s12990 Populus trichocarpa POPTR_0001s12990 I 0.680
MTR_4g086190 Medicago truncatula MTR_4g086190 I 0.680
OPUNC08G19980 Oryza punctata OPUNC08G19980 I 0.680
XM_002304604.1 Populus trichocarpa POPTR_0003s16090 I 0.680
Pm017697 Prunus mume Pm017697 I 0.679
PRUPE_ppa020417mg Prunus persica PRUPE_ppa020417mg I 0.679
mgf022434m Mimulus guttatus mgf022434m I 0.679
VIT_01s0150g00120 Vitis vinifera VIT_01s0150g00120 I 0.679
PGSC0003DMG400004024 Solanum tuberosum PGSC0003DMG400004024 I 0.678
Ca_11765 Cicer arietinum Ca_11765 I 0.678
MLOC_67996 Hordeum vulgare MLOC_67996 I 0.678
mgf022451m Mimulus guttatus mgf022451m I 0.677
Solyc02g090770.1 Solanum lycopersicum Solyc02g090770.1 I 0.677
LPERR10G14500 Leersia perrieri LPERR10G14500 I 0.677
GRMZM2G138396 Zea mays GRMZM2G138396 I 0.677
GLYMA03G41640 Glycine max GLYMA03G41640 I 0.677
MDP0000312701 Malus domestica MDP0000312701 I 0.677