Bra003701 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra003701 T001001_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.689 0.860
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.689 0.860
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.689 0.860
ERF8
M01608_2.00 		Arabidopsis thaliana
MGCCGNMNNN
NNNKNCGGCK		 PBM
Weirauch et al.(2014)
pTH8095 		0.679 0.800
ERF8
M06586_2.00 		Arabidopsis thaliana
NYHDYCKCCGCCGYH
DRCGGCGGMGRHDRN		 Dap-seq
OMalley et al.(2016)
ERF8_col_a 		0.679 0.800
ERF8
M06587_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN
NHDDYGRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ERF8_colamp_a 		0.679 0.800
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.677 0.800
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.677 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003701.1-P AP2 18 69

Links

Other AP2 family TFs
Other Brassica rapa TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra021594 Brassica rapa Bra021594 I 0.758
Bo1g129710 Brassica oleracea Bo1g129710 I 0.748
GLYMA07G23225 Glycine max GLYMA07G23225 I 0.732
Bra010880 Brassica rapa Bra010880 I 0.729
Bo3g143350 Brassica oleracea Bo3g143350 I 0.729
Bo7g048170 Brassica oleracea Bo7g048170 I 0.721
Bra030095 Brassica rapa Bra030095 I 0.721
Pm011391 Prunus mume Pm011391 I 0.710
ERF11 Arabidopsis lyrata fgenesh2_kg.1__3005__AT1G28370.1 I 0.710
PRUPE_ppa010982mg Prunus persica PRUPE_ppa010982mg I 0.710
MTR_2g078680 Medicago truncatula MTR_2g078680 I 0.706
MDP0000324718 Malus domestica MDP0000324718 I 0.705
Bra027270 Brassica rapa Bra027270 I 0.702
Bo5g127380 Brassica oleracea Bo5g127380 I 0.702
GLYMA12G26836 Glycine max GLYMA12G26836 I 0.697
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.697
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.697
27904.m000217 Ricinus communis 27904.m000217 I 0.697
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I 0.697
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I 0.697
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I 0.697
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I 0.697
TCM_031608 Theobroma cacao TCM_031608 I 0.697
gene00975-v1.0-hybrid Fragaria vesca gene00975-v1.0-hybrid I 0.696
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I 0.695
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.695
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.695
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I 0.695
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I 0.695
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I 0.693
MDP0000868587 Malus domestica MDP0000868587 I 0.693
Bo2g122260 Brassica oleracea Bo2g122260 I 0.693
Bra036016 Brassica rapa Bra036016 I 0.693
GLYMA06G35710 Glycine max GLYMA06G35710 I 0.692
Ca_22534 Cicer arietinum Ca_22534 I 0.692
Carubv10014552m.g Capsella rubella Carubv10014552m.g I 0.691
Bra030957 Brassica rapa Bra030957 I 0.691
Pavir.Gb00545 Panicum virgatum Pavir.Gb00545 I 0.691
Thhalv10011796m.g Eutrema salsugineum Thhalv10011796m.g I 0.691
Thhalv10021456m.g Eutrema salsugineum Thhalv10021456m.g I 0.691
Carubv10010374m.g Capsella rubella Carubv10010374m.g I 0.690
Cagra.1472s0014 Capsella grandiflora Cagra.1472s0014 I 0.690
Carubv10027246m.g Capsella rubella Carubv10027246m.g I 0.690
Cagra.0381s0006 Capsella grandiflora Cagra.0381s0006 I 0.690
GSMUA_Achr8G15830_001 Musa acuminata GSMUA_Achr8G15830_001 I 0.690
Bo3g066710 Brassica oleracea Bo3g066710 I 0.689
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I 0.689
ERF4 Arabidopsis thaliana AT3G15210 D 0.689
Bra001588 Brassica rapa Bra001588 I 0.689
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I 0.689
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I 0.688
GLYMA08G38171 Glycine max GLYMA08G38171 I 0.687
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I 0.686
Thhalv10003431m.g Eutrema salsugineum Thhalv10003431m.g I 0.685
29983.m003147 Ricinus communis 29983.m003147 I 0.685
Carubv10011371m.g Capsella rubella Carubv10011371m.g I 0.683
Cagra.0897s0005 Capsella grandiflora Cagra.0897s0005 I 0.683
GSMUA_Achr9G11480_001 Musa acuminata GSMUA_Achr9G11480_001 I 0.683
SapurV1A.0207s0200 Salix purpurea SapurV1A.0207s0200 I 0.682
cassava46560.m1 Manihot esculenta cassava46560.m1 I 0.682
ATERF-8 Arabidopsis lyrata fgenesh2_kg.1__4394__AT1G53170.1 I 0.680
Bo5g004090 Brassica oleracea Bo5g004090 I 0.680
Bra015266 Brassica rapa Bra015266 I 0.680
Cucsa.122930 Cucumis sativus Cucsa.122930 I 0.680
Lus10039857.g Linum usitatissimum Lus10039857.g I 0.679
ERF8 Arabidopsis thaliana AT1G53170 D 0.679
Bostr.0124s0109 Boechera stricta Bostr.0124s0109 I 0.678
ERF9 Arabidopsis lyrata fgenesh2_kg.8__388__AT5G44210.1 I 0.677
Bostr.3148s0037 Boechera stricta Bostr.3148s0037 I 0.677
ERF9 Arabidopsis thaliana AT5G44210 D 0.677
Lus10033664.g Linum usitatissimum Lus10033664.g I 0.677
PGSC0003DMG400012828 Solanum tuberosum PGSC0003DMG400012828 I 0.677