Bra026280 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra026280 T001171_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.815 0.980
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.815 0.980
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.696 0.760
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.696 0.760
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.685 0.840
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.685 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra026280.1-P AP2 140 191

Links

Other AP2 family TFs
Other Brassica rapa TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo8g054130 Brassica oleracea Bo8g054130 I 0.815
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.815
Bra010383 Brassica rapa Bra010383 I 0.815
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.815
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.815
Bo1g051230 Brassica oleracea Bo1g051230 I 0.815
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.815
ERF054 Arabidopsis thaliana AT4G28140 D 0.815
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.807
Bra024222 Brassica rapa Bra024222 I 0.795
Bo7g111910 Brassica oleracea Bo7g111910 I 0.795
scaffold_304438.1 Arabidopsis lyrata scaffold_304438.1 I 0.732
ERF053 Arabidopsis thaliana AT2G20880 I 0.732
Bo8g102130 Brassica oleracea Bo8g102130 I 0.732
Bra031146 Brassica rapa Bra031146 I 0.724
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.724
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.709
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I 0.696
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.696
Carubv10014129m.g Capsella rubella Carubv10014129m.g I 0.696
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I 0.696
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.696
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I 0.693
ERF060 Arabidopsis thaliana AT4G39780 I 0.693
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I 0.693
Carubv10007787m.g Capsella rubella Carubv10007787m.g I 0.691
Cagra.5414s0001 Capsella grandiflora Cagra.5414s0001 I 0.691
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.690
Bo3g100470 Brassica oleracea Bo3g100470 I 0.690
Bra003659 Brassica rapa Bra003659 I 0.687
VIT_00s0662g00040 Vitis vinifera VIT_00s0662g00040 I 0.686
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.686
VIT_00s0662g00030 Vitis vinifera VIT_00s0662g00030 I 0.686
Bo5g069450 Brassica oleracea Bo5g069450 I 0.685
Bo04101s010 Brassica oleracea Bo04101s010 I 0.685
Cagra.1707s0001 Capsella grandiflora Cagra.1707s0001 I 0.685
Cucsa.064390 Cucumis sativus Cucsa.064390 I 0.685
Cla023489 Citrullus lanatus Cla023489 I 0.685
Ca_16631 Cicer arietinum Ca_16631 I 0.685
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.685
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.685
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.685
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.685
MDP0000865032 Malus domestica MDP0000865032 I 0.685
MDP0000683814 Malus domestica MDP0000683814 I 0.685
ERF055 Arabidopsis thaliana AT1G36060 D 0.685
Bra040381 Brassica rapa Bra040381 I 0.685
MDP0000453797 Malus domestica MDP0000453797 I 0.685
Carubv10009949m.g Capsella rubella Carubv10009949m.g I 0.685
GLYMA08G14600 Glycine max GLYMA08G14600 I 0.684
GLYMA18G02170 Glycine max GLYMA18G02170 I 0.684
GLYMA05G31370 Glycine max GLYMA05G31370 I 0.684
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.683
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I 0.680
Bra017879 Brassica rapa Bra017879 I 0.680
Bo7g119000 Brassica oleracea Bo7g119000 I 0.680
ORGLA03G0064600 Oryza glaberrima ORGLA03G0064600 I 0.678
ONIVA03G06360 Oryza nivara ONIVA03G06360 I 0.678
OMERI03G06570 Oryza meridionalis OMERI03G06570 I 0.678
OGLUM03G06750 Oryza glumaepatula OGLUM03G06750 I 0.678
BGIOSGA011298 Oryza indica BGIOSGA011298 I 0.678
Aquca_034_00155 Aquilegia coerulea Aquca_034_00155 I 0.678
OPUNC03G06400 Oryza punctata OPUNC03G06400 I 0.678
e_gw1.187.17.1 Physcomitrella patens e_gw1.187.17.1 I 0.678
OS03G0191900 Oryza sativa OS03G0191900 I 0.678
ORUFI03G06570 Oryza rufipogon ORUFI03G06570 I 0.678
Bo6g081850 Brassica oleracea Bo6g081850 I 0.677
GRMZM2G003466 Zea mays GRMZM2G003466 I 0.677
Si036827m.g Setaria italica Si036827m.g I 0.677
Sb01g044410 Sorghum bicolor Sb01g044410 I 0.677
AMTR_s00089p00102760 Amborella trichopoda AMTR_s00089p00102760 I 0.677
Pavir.Ia04894 Panicum virgatum Pavir.Ia04894 I 0.677