SNZ (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 fgenesh1_pm.C_scaffold_4001673 T001630_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC

GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.801 0.939
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN

NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.788 0.898
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_4001673 AP2 103 153

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.801
SNZ Arabidopsis thaliana AT2G39250 I 0.889
SMZ Arabidopsis thaliana AT3G54990 D 0.801
TOE2 Arabidopsis thaliana AT5G60120 D 0.788
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.889
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.801
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.788
Bo9g141100 Brassica oleracea Bo9g141100 I 0.788
Bo8g087280 Brassica oleracea Bo8g087280 I 0.801
Bo6g068410 Brassica oleracea Bo6g068410 I 0.819
Bra007123 Brassica rapa Bra007123 I 0.801
Bra020262 Brassica rapa Bra020262 I 0.788
Bra002510 Brassica rapa Bra002510 I 0.788
PK16652.1 Cannabis sativa PK16652.1 I 0.787
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.801
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.788
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I 0.860
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.801
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.860
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.788
Ca_26761 Cicer arietinum Ca_26761 I 0.751
Cla020387 Citrullus lanatus Cla020387 I 0.787
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.787
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.797
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.788
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.801
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.794
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.781
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.781
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.787
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.787
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.786
MDP0000285955 Malus domestica MDP0000285955 I 0.798
MDP0000281079 Malus domestica MDP0000281079 I 0.798
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.776
Pm018608 Prunus mume Pm018608 I 0.798
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.798
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.787
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.791
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.791
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.787