OBART08G17900 (Oryza barthii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OBART08G17900 T003165_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.734 0.956
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.677 0.778
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.677 0.778
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.677 0.778
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART08G17900.1 AP2 84 130

Links

Other AP2 family TFs
Other Oryza barthii TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OGLUM08G18720 Oryza glumaepatula OGLUM08G18720 I 0.734
OLONG_013554 Oryza longistaminata OLONG_013554 I 0.734
ONIVA08G19930 Oryza nivara ONIVA08G19930 I 0.734
OPUNC08G15760 Oryza punctata OPUNC08G15760 I 0.734
LOC_Os08g36920 Oryza sativa LOC_Os08g36920 D 0.734
OS08G0474000 Oryza sativa OS08G0474000 I 0.734
BRADI3G38140 Brachypodium distachyon BRADI3G38140 I 0.731
OB08G25030 Oryza brachyantha OB08G25030 I 0.730
Pavir.Fa00656 Panicum virgatum Pavir.Fa00656 I 0.730
Si014237m.g Setaria italica Si014237m.g I 0.727
LPERR09G09240 Leersia perrieri LPERR09G09240 I 0.726
GRMZM2G369472 Zea mays GRMZM2G369472 I 0.722
Sb07g023030 Sorghum bicolor Sb07g023030 I 0.722
ONIVA03G20710 Oryza nivara ONIVA03G20710 I 0.716
OGLUM09G13230 Oryza glumaepatula OGLUM09G13230 I 0.716
BGIOSGA030907 Oryza indica BGIOSGA030907 I 0.716
OPUNC09G11150 Oryza punctata OPUNC09G11150 I 0.716
ORUFI09G13770 Oryza rufipogon ORUFI09G13770 I 0.716
ORGLA09G0098000 Oryza glaberrima ORGLA09G0098000 I 0.716
OS09G0457900 Oryza sativa OS09G0457900 I 0.716
OMERI09G10200 Oryza meridionalis OMERI09G10200 I 0.716
OBART09G12810 Oryza barthii OBART09G12810 I 0.716
OB09G19290 Oryza brachyantha OB09G19290 I 0.716
GRMZM2G138396 Zea mays GRMZM2G138396 I 0.709
MLOC_67996 Hordeum vulgare MLOC_67996 I 0.709
ORUFI08G20040 Oryza rufipogon ORUFI08G20040 I 0.707
Ciclev10028930m.g Citrus clementina Ciclev10028930m.g I 0.703
LPERR08G14810 Leersia perrieri LPERR08G14810 I 0.701
gene24044-v1.0-hybrid Fragaria vesca gene24044-v1.0-hybrid I 0.700
Si030856m.g Setaria italica Si030856m.g I 0.699
evm.TU.supercontig_62.11 Carica papaya evm.TU.supercontig_62.11 I 0.699
Sb02g026630 Sorghum bicolor Sb02g026630 I 0.697
MTR_4g086165 Medicago truncatula MTR_4g086165 I 0.697
MDP0000254227 Malus domestica MDP0000254227 I 0.697
MTR_4g086190 Medicago truncatula MTR_4g086190 I 0.697
MTR_4g086160 Medicago truncatula MTR_4g086160 I 0.697
GSMUA_Achr3G06960_001 Musa acuminata GSMUA_Achr3G06960_001 I 0.695
Pm026408 Prunus mume Pm026408 I 0.695
Pm021321 Prunus mume Pm021321 I 0.693
PRUPE_ppa023235mg Prunus persica PRUPE_ppa023235mg I 0.693
GSMUA_Achr7G18930_001 Musa acuminata GSMUA_Achr7G18930_001 I 0.693
TCM_007061 Theobroma cacao TCM_007061 I 0.692
cassava38228.valid.m1 Manihot esculenta cassava38228.valid.m1 I 0.692
Gorai.013G043700 Gossypium raimondii Gorai.013G043700 I 0.692
MTR_4g086220 Medicago truncatula MTR_4g086220 I 0.692
Gorai.008G025100 Gossypium raimondii Gorai.008G025100 I 0.692
Gorai.005G238000 Gossypium raimondii Gorai.005G238000 I 0.692
POPTR_0004s14840 Populus trichocarpa POPTR_0004s14840 I 0.689
POPTR_0270s00200 Populus trichocarpa POPTR_0270s00200 I 0.689
Pavir.J19559 Panicum virgatum Pavir.J19559 I 0.688
Solyc01g108240.2 Solanum lycopersicum Solyc01g108240.2 I 0.686
PGSC0003DMG400025797 Solanum tuberosum PGSC0003DMG400025797 I 0.686
SapurV1A.0643s0230 Salix purpurea SapurV1A.0643s0230 I 0.685
SapurV1A.2778s0010 Salix purpurea SapurV1A.2778s0010 I 0.685
POPTR_0009s10470 Populus trichocarpa POPTR_0009s10470 I 0.685
Eucgr.I01153 Eucalyptus grandis Eucgr.I01153 I 0.684
Carubv10025511m.g Capsella rubella Carubv10025511m.g I 0.684
Cagra.0301s0013 Capsella grandiflora Cagra.0301s0013 I 0.684
PRUPE_ppa017002mg Prunus persica PRUPE_ppa017002mg I 0.680
MDP0000317932 Malus domestica MDP0000317932 I 0.679
Bo4g043530 Brassica oleracea Bo4g043530 I 0.678
Bra005480 Brassica rapa Bra005480 I 0.678
Thhalv10017235m.g Eutrema salsugineum Thhalv10017235m.g I 0.677
AT2G33710 Arabidopsis thaliana AT2G33710 D 0.677
fgenesh2_kg.4__1380__AT2G33710.1 Arabidopsis lyrata fgenesh2_kg.4__1380__AT2G33710.1 I 0.677
Bostr.23794s0729 Boechera stricta Bostr.23794s0729 I 0.677