POPTR_0014s04620 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0014s04620 T004722_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD

HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.714 0.714
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD

HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.714 0.714
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN

NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.714 0.714
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s04620.1 AP2 40 92

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30174.m008755 Ricinus communis 30174.m008755 I 0.746
30174.m008756 Ricinus communis 30174.m008756 I 0.718
30174.m008759 Ricinus communis 30174.m008759 I 0.711
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.714
Bo4g024140 Brassica oleracea Bo4g024140 I 0.714
Bo4g195220 Brassica oleracea Bo4g195220 I 0.714
Bo7g040810 Brassica oleracea Bo7g040810 I 0.682
Bo9g001020 Brassica oleracea Bo9g001020 I 0.699
Bostr.14547s0008 Boechera stricta Bostr.14547s0008 I 0.702
Bra004873 Brassica rapa Bra004873 I 0.714
Bra014925 Brassica rapa Bra014925 I 0.682
Bra037630 Brassica rapa Bra037630 I 0.714
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.714
Cagra.4714s0001 Capsella grandiflora Cagra.4714s0001 I 0.703
Carubv10005868m.g Capsella rubella Carubv10005868m.g I 0.703
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.714
cassava19881.m1 Manihot esculenta cassava19881.m1 I 0.746
cassava19882.m1 Manihot esculenta cassava19882.m1 I 0.742
cassava19883.m1 Manihot esculenta cassava19883.m1 I 0.735
Ca_02325 Cicer arietinum Ca_02325 I 0.679
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.711
Cla021383 Citrullus lanatus Cla021383 I 0.699
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.717
Cucsa.260030 Cucumis sativus Cucsa.260030 I 0.712
ERF13 Arabidopsis thaliana AT2G44840 D 0.714
Eucgr.E01571 Eucalyptus grandis Eucgr.E01571 I 0.685
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.731
Eucgr.G00388 Eucalyptus grandis Eucgr.G00388 I 0.726
Eucgr.G00390 Eucalyptus grandis Eucgr.G00390 I 0.743
Eucgr.G00391 Eucalyptus grandis Eucgr.G00391 I 0.743
Eucgr.G00392 Eucalyptus grandis Eucgr.G00392 I 0.732
Eucgr.G00393 Eucalyptus grandis Eucgr.G00393 I 0.712
Eucgr.G00394 Eucalyptus grandis Eucgr.G00394 I 0.713
Eucgr.G00396 Eucalyptus grandis Eucgr.G00396 I 0.713
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I 0.735
Eucgr.G00943 Eucalyptus grandis Eucgr.G00943 I 0.719
evm.TU.supercontig_101.15 Carica papaya evm.TU.supercontig_101.15 I 0.737
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.722
gene04916-v1.0-hybrid Fragaria vesca gene04916-v1.0-hybrid I 0.687
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I 0.738
GLYMA03G26310 Glycine max GLYMA03G26310 I 0.693
GLYMA03G26520 Glycine max GLYMA03G26520 I 0.687
GLYMA07G14070 Glycine max GLYMA07G14070 I 0.691
Gorai.004G165800 Gossypium raimondii Gorai.004G165800 I 0.734
Gorai.007G086000 Gossypium raimondii Gorai.007G086000 I 0.742
Gorai.008G108400 Gossypium raimondii Gorai.008G108400 I 0.678
Gorai.008G108500 Gossypium raimondii Gorai.008G108500 I 0.718
Gorai.008G108600 Gossypium raimondii Gorai.008G108600 I 0.679
Lus10004011.g Linum usitatissimum Lus10004011.g I 0.699
Lus10016209.g Linum usitatissimum Lus10016209.g I 0.717
Lus10016210.g Linum usitatissimum Lus10016210.g I 0.726
Lus10016212.g Linum usitatissimum Lus10016212.g I 0.705
Lus10016223.g Linum usitatissimum Lus10016223.g I 0.699
Lus10016224.g Linum usitatissimum Lus10016224.g I 0.706
Lus10016225.g Linum usitatissimum Lus10016225.g I 0.704
Lus10016227.g Linum usitatissimum Lus10016227.g I 0.684
Lus10029314.g Linum usitatissimum Lus10029314.g I 0.684
Lus10029318.g Linum usitatissimum Lus10029318.g I 0.706
Lus10029319.g Linum usitatissimum Lus10029319.g I 0.691
Lus10029331.g Linum usitatissimum Lus10029331.g I 0.715
Lus10029333.g Linum usitatissimum Lus10029333.g I 0.709
Lus10029334.g Linum usitatissimum Lus10029334.g I 0.708
Lus10030261.g Linum usitatissimum Lus10030261.g I 0.699
MDP0000122665 Malus domestica MDP0000122665 I 0.688
MDP0000135205 Malus domestica MDP0000135205 I 0.688
MDP0000178398 Malus domestica MDP0000178398 I 0.699
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.727
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I 0.725
Pm017696 Prunus mume Pm017696 I 0.735
Pm017698 Prunus mume Pm017698 I 0.687
Pm017699 Prunus mume Pm017699 I 0.725
Pm017700 Prunus mume Pm017700 I 0.684
POPTR_0014s04600 Populus trichocarpa POPTR_0014s04600 I 0.745
POPTR_0014s04610 Populus trichocarpa POPTR_0014s04610 I 0.750
POPTR_0014s04630 Populus trichocarpa POPTR_0014s04630 I 0.737
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I 0.734
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I 0.735
PRUPE_ppa023698mg Prunus persica PRUPE_ppa023698mg I 0.687
PRUPE_ppa025748mg Prunus persica PRUPE_ppa025748mg I 0.693
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I 0.735
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I 0.731
scaffold_604310.1 Arabidopsis lyrata scaffold_604310.1 I 0.711
TCM_005705 Theobroma cacao TCM_005705 I 0.727
TCM_005706 Theobroma cacao TCM_005706 I 0.737
TCM_005707 Theobroma cacao TCM_005707 I 0.738
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.714
Thhalv10022108m.g Eutrema salsugineum Thhalv10022108m.g I 0.684
Thhalv10029212m.g Eutrema salsugineum Thhalv10029212m.g I 0.686
VIT_15s0021g01630 Vitis vinifera VIT_15s0021g01630 I 0.681