CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0014s04620
(
Populus trichocarpa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
POPTR_0014s04620
T004722_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.714
0.714
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.714
0.714
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.714
0.714
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0014s04620.1
AP2
40
92
NDYKGARRKPWEKYAAEIRDPTKNGARIWLGTYETPEDAALAYDQAAFKMRGA
Links
Other
AP2
family TFs
Other
Populus trichocarpa
TFs
89 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0014s04610
Populus trichocarpa
POPTR_0014s04610
I
0.750
30174.m008755
Ricinus communis
30174.m008755
I
0.746
cassava19881.m1
Manihot esculenta
cassava19881.m1
I
0.746
POPTR_0014s04600
Populus trichocarpa
POPTR_0014s04600
I
0.745
Eucgr.G00390
Eucalyptus grandis
Eucgr.G00390
I
0.743
Eucgr.G00391
Eucalyptus grandis
Eucgr.G00391
I
0.743
Gorai.007G086000
Gossypium raimondii
Gorai.007G086000
I
0.742
cassava19882.m1
Manihot esculenta
cassava19882.m1
I
0.742
TCM_005707
Theobroma cacao
TCM_005707
I
0.738
gene04917-v1.0-hybrid
Fragaria vesca
gene04917-v1.0-hybrid
I
0.738
POPTR_0014s04630
Populus trichocarpa
POPTR_0014s04630
I
0.737
evm.TU.supercontig_101.15
Carica papaya
evm.TU.supercontig_101.15
I
0.737
TCM_005706
Theobroma cacao
TCM_005706
I
0.737
Eucgr.G00397
Eucalyptus grandis
Eucgr.G00397
I
0.735
cassava19883.m1
Manihot esculenta
cassava19883.m1
I
0.735
Pm017696
Prunus mume
Pm017696
I
0.735
PRUPE_ppb014367mg
Prunus persica
PRUPE_ppb014367mg
I
0.735
PRUPE_ppa016903mg
Prunus persica
PRUPE_ppa016903mg
I
0.735
Gorai.004G165800
Gossypium raimondii
Gorai.004G165800
I
0.734
POPTR_0014s04640
Populus trichocarpa
POPTR_0014s04640
I
0.734
Eucgr.G00392
Eucalyptus grandis
Eucgr.G00392
I
0.732
Eucgr.G00002
Eucalyptus grandis
Eucgr.G00002
I
0.731
SapurV1A.0124s0170
Salix purpurea
SapurV1A.0124s0170
I
0.731
TCM_005705
Theobroma cacao
TCM_005705
I
0.727
MTR_8g006815
Medicago truncatula
MTR_8g006815
I
0.727
Eucgr.G00388
Eucalyptus grandis
Eucgr.G00388
I
0.726
Lus10016210.g
Linum usitatissimum
Lus10016210.g
I
0.726
orange1.1g044584m.g
Citrus sinensis
orange1.1g044584m.g
I
0.725
Pm017699
Prunus mume
Pm017699
I
0.725
gene04913-v1.0-hybrid
Fragaria vesca
gene04913-v1.0-hybrid
I
0.722
Eucgr.G00943
Eucalyptus grandis
Eucgr.G00943
I
0.719
30174.m008756
Ricinus communis
30174.m008756
I
0.718
Gorai.008G108500
Gossypium raimondii
Gorai.008G108500
I
0.718
Cucsa.255330
Cucumis sativus
Cucsa.255330
I
0.717
Lus10016209.g
Linum usitatissimum
Lus10016209.g
I
0.717
Lus10029331.g
Linum usitatissimum
Lus10029331.g
I
0.715
Cagra.0239s0035
Capsella grandiflora
Cagra.0239s0035
I
0.714
Thhalv10001758m.g
Eutrema salsugineum
Thhalv10001758m.g
I
0.714
ERF13
Arabidopsis thaliana
AT2G44840
D
0.714
Carubv10023967m.g
Capsella rubella
Carubv10023967m.g
I
0.714
Bo4g024140
Brassica oleracea
Bo4g024140
I
0.714
Bra004873
Brassica rapa
Bra004873
I
0.714
ATERF13
Arabidopsis lyrata
scaffold_403422.1
I
0.714
Bo4g195220
Brassica oleracea
Bo4g195220
I
0.714
Bra037630
Brassica rapa
Bra037630
I
0.714
Eucgr.G00394
Eucalyptus grandis
Eucgr.G00394
I
0.713
Eucgr.G00396
Eucalyptus grandis
Eucgr.G00396
I
0.713
Eucgr.G00393
Eucalyptus grandis
Eucgr.G00393
I
0.712
Cucsa.260030
Cucumis sativus
Cucsa.260030
I
0.712
30174.m008759
Ricinus communis
30174.m008759
I
0.711
chr3.CM0080.270.nc
Lotus japonicus
chr3.CM0080.270.nc
I
0.711
scaffold_604310.1
Arabidopsis lyrata
scaffold_604310.1
I
0.711
Lus10029333.g
Linum usitatissimum
Lus10029333.g
I
0.709
Lus10029334.g
Linum usitatissimum
Lus10029334.g
I
0.708
Lus10016224.g
Linum usitatissimum
Lus10016224.g
I
0.706
Lus10029318.g
Linum usitatissimum
Lus10029318.g
I
0.706
Lus10016212.g
Linum usitatissimum
Lus10016212.g
I
0.705
Lus10016225.g
Linum usitatissimum
Lus10016225.g
I
0.704
Carubv10005868m.g
Capsella rubella
Carubv10005868m.g
I
0.703
Cagra.4714s0001
Capsella grandiflora
Cagra.4714s0001
I
0.703
Bostr.14547s0008
Boechera stricta
Bostr.14547s0008
I
0.702
Lus10004011.g
Linum usitatissimum
Lus10004011.g
I
0.699
Lus10030261.g
Linum usitatissimum
Lus10030261.g
I
0.699
Cla021383
Citrullus lanatus
Cla021383
I
0.699
Bo9g001020
Brassica oleracea
Bo9g001020
I
0.699
Lus10016223.g
Linum usitatissimum
Lus10016223.g
I
0.699
MDP0000178398
Malus domestica
MDP0000178398
I
0.699
PRUPE_ppa025748mg
Prunus persica
PRUPE_ppa025748mg
I
0.693
GLYMA03G26310
Glycine max
GLYMA03G26310
I
0.693
Lus10029319.g
Linum usitatissimum
Lus10029319.g
I
0.691
GLYMA07G14070
Glycine max
GLYMA07G14070
I
0.691
MDP0000122665
Malus domestica
MDP0000122665
I
0.688
MDP0000135205
Malus domestica
MDP0000135205
I
0.688
gene04916-v1.0-hybrid
Fragaria vesca
gene04916-v1.0-hybrid
I
0.687
Pm017698
Prunus mume
Pm017698
I
0.687
PRUPE_ppa023698mg
Prunus persica
PRUPE_ppa023698mg
I
0.687
GLYMA03G26520
Glycine max
GLYMA03G26520
I
0.687
Thhalv10029212m.g
Eutrema salsugineum
Thhalv10029212m.g
I
0.686
Eucgr.E01571
Eucalyptus grandis
Eucgr.E01571
I
0.685
Pm017700
Prunus mume
Pm017700
I
0.684
Lus10029314.g
Linum usitatissimum
Lus10029314.g
I
0.684
Thhalv10022108m.g
Eutrema salsugineum
Thhalv10022108m.g
I
0.684
Lus10016227.g
Linum usitatissimum
Lus10016227.g
I
0.684
Bra014925
Brassica rapa
Bra014925
I
0.682
Bo7g040810
Brassica oleracea
Bo7g040810
I
0.682
VIT_15s0021g01630
Vitis vinifera
VIT_15s0021g01630
I
0.681
Gorai.008G108600
Gossypium raimondii
Gorai.008G108600
I
0.679
Ca_02325
Cicer arietinum
Ca_02325
I
0.679
Gorai.008G108400
Gossypium raimondii
Gorai.008G108400
I
0.678