Lus10029319.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10029319.g T008865_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.755 0.771
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.755 0.771
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.755 0.771
ERF098
M01618_2.00 		Arabidopsis thaliana
NNGCCGNC
GNCGGCNN		 PBM
Weirauch et al.(2014)
pTH8259 		0.691 0.729
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.686 0.708
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.686 0.708
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10029319 AP2 65 116

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10016223.g Linum usitatissimum Lus10016223.g I 0.843
Lus10029314.g Linum usitatissimum Lus10029314.g I 0.809
Lus10016227.g Linum usitatissimum Lus10016227.g I 0.809
Lus10029318.g Linum usitatissimum Lus10029318.g I 0.806
Lus10016224.g Linum usitatissimum Lus10016224.g I 0.806
Lus10029331.g Linum usitatissimum Lus10029331.g I 0.794
Gorai.008G108500 Gossypium raimondii Gorai.008G108500 I 0.785
Lus10016212.g Linum usitatissimum Lus10016212.g I 0.784
Lus10016210.g Linum usitatissimum Lus10016210.g I 0.783
Lus10029333.g Linum usitatissimum Lus10029333.g I 0.783
TCM_005705 Theobroma cacao TCM_005705 I 0.781
Lus10016209.g Linum usitatissimum Lus10016209.g I 0.777
cassava19881.m1 Manihot esculenta cassava19881.m1 I 0.775
POPTR_0014s04600 Populus trichocarpa POPTR_0014s04600 I 0.775
Lus10016225.g Linum usitatissimum Lus10016225.g I 0.775
Gorai.004G165800 Gossypium raimondii Gorai.004G165800 I 0.774
Lus10029334.g Linum usitatissimum Lus10029334.g I 0.772
cassava19882.m1 Manihot esculenta cassava19882.m1 I 0.771
Cla021383 Citrullus lanatus Cla021383 I 0.771
30174.m008756 Ricinus communis 30174.m008756 I 0.763
Lus10004011.g Linum usitatissimum Lus10004011.g I 0.761
Lus10030261.g Linum usitatissimum Lus10030261.g I 0.761
Gorai.007G086000 Gossypium raimondii Gorai.007G086000 I 0.760
POPTR_0014s04610 Populus trichocarpa POPTR_0014s04610 I 0.760
GLYMA07G14070 Glycine max GLYMA07G14070 I 0.759
cassava19883.m1 Manihot esculenta cassava19883.m1 I 0.759
30174.m008755 Ricinus communis 30174.m008755 I 0.758
Bo4g024140 Brassica oleracea Bo4g024140 I 0.755
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.755
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.755
Bra004873 Brassica rapa Bra004873 I 0.755
Bra037630 Brassica rapa Bra037630 I 0.755
TCM_005706 Theobroma cacao TCM_005706 I 0.755
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.755
Bo4g195220 Brassica oleracea Bo4g195220 I 0.755
ERF13 Arabidopsis thaliana AT2G44840 D 0.755
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.755
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.754
Eucgr.G00392 Eucalyptus grandis Eucgr.G00392 I 0.752
Eucgr.G00394 Eucalyptus grandis Eucgr.G00394 I 0.752
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I 0.752
Eucgr.G00396 Eucalyptus grandis Eucgr.G00396 I 0.752
Eucgr.G00393 Eucalyptus grandis Eucgr.G00393 I 0.752
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I 0.752
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.750
Eucgr.G00388 Eucalyptus grandis Eucgr.G00388 I 0.749
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I 0.746
Cucsa.260030 Cucumis sativus Cucsa.260030 I 0.745
Pm017696 Prunus mume Pm017696 I 0.745
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I 0.745
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I 0.743
Pm017699 Prunus mume Pm017699 I 0.742
Eucgr.G00391 Eucalyptus grandis Eucgr.G00391 I 0.742
Eucgr.G00390 Eucalyptus grandis Eucgr.G00390 I 0.742
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.741
Eucgr.G00943 Eucalyptus grandis Eucgr.G00943 I 0.738
Thhalv10022108m.g Eutrema salsugineum Thhalv10022108m.g I 0.738
TCM_005707 Theobroma cacao TCM_005707 I 0.737
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I 0.737
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I 0.736
Bo7g040810 Brassica oleracea Bo7g040810 I 0.735
Bra014925 Brassica rapa Bra014925 I 0.735
POPTR_0014s04630 Populus trichocarpa POPTR_0014s04630 I 0.732
Cucsa.260040 Cucumis sativus Cucsa.260040 I 0.731
evm.TU.supercontig_101.15 Carica papaya evm.TU.supercontig_101.15 I 0.729
Bra023748 Brassica rapa Bra023748 I 0.726
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.726
Bo1g102220 Brassica oleracea Bo1g102220 I 0.726
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.724
Gorai.008G108600 Gossypium raimondii Gorai.008G108600 I 0.722
Ca_17212 Cicer arietinum Ca_17212 I 0.721
Eucgr.E01571 Eucalyptus grandis Eucgr.E01571 I 0.721
30174.m008759 Ricinus communis 30174.m008759 I 0.721
MDP0000178398 Malus domestica MDP0000178398 I 0.717
SapurV1A.0124s0180 Salix purpurea SapurV1A.0124s0180 I 0.717
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.717
GLYMA03G26310 Glycine max GLYMA03G26310 I 0.713
Cla021384 Citrullus lanatus Cla021384 I 0.711
MDP0000135205 Malus domestica MDP0000135205 I 0.710
MDP0000122665 Malus domestica MDP0000122665 I 0.710
GLYMA03G26520 Glycine max GLYMA03G26520 I 0.710
GLYMA03G26530 Glycine max GLYMA03G26530 I 0.710
Gorai.007G086100 Gossypium raimondii Gorai.007G086100 I 0.710
PRUPE_ppa023698mg Prunus persica PRUPE_ppa023698mg I 0.709
gene04916-v1.0-hybrid Fragaria vesca gene04916-v1.0-hybrid I 0.709
Pm017698 Prunus mume Pm017698 I 0.709
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I 0.708
GSMUA_Achr5G12530_001 Musa acuminata GSMUA_Achr5G12530_001 I 0.708
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I 0.708
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I 0.708
Ca_02325 Cicer arietinum Ca_02325 I 0.706
Pm017700 Prunus mume Pm017700 I 0.706
Bostr.25993s0288 Boechera stricta Bostr.25993s0288 I 0.705
mgf021756m Mimulus guttatus mgf021756m I 0.703
Bostr.14547s0008 Boechera stricta Bostr.14547s0008 I 0.700
Ca_17211 Cicer arietinum Ca_17211 I 0.699
PGSC0003DMG400026046 Solanum tuberosum PGSC0003DMG400026046 I 0.699
e_gw1.72.116.1 Physcomitrella patens e_gw1.72.116.1 I 0.698
e_gw1.53.114.1 Physcomitrella patens e_gw1.53.114.1 I 0.698
Eucgr.E01561 Eucalyptus grandis Eucgr.E01561 I 0.697
Lus10013959.g Linum usitatissimum Lus10013959.g I 0.697
VIT_15s0021g01630 Vitis vinifera VIT_15s0021g01630 I 0.697
PRUPE_ppa025748mg Prunus persica PRUPE_ppa025748mg I 0.697
Solyc01g090370.1 Solanum lycopersicum Solyc01g090370.1 I 0.696
MTR_8g006840 Medicago truncatula MTR_8g006840 I 0.695
Gorai.004G070600 Gossypium raimondii Gorai.004G070600 I 0.695
chr3.CM0080.200.nd Lotus japonicus chr3.CM0080.200.nd I 0.695
Gorai.008G108400 Gossypium raimondii Gorai.008G108400 I 0.694
Cagra.4714s0001 Capsella grandiflora Cagra.4714s0001 I 0.693
Gorai.004G070800 Gossypium raimondii Gorai.004G070800 I 0.693
Carubv10005868m.g Capsella rubella Carubv10005868m.g I 0.693
Gorai.004G070500 Gossypium raimondii Gorai.004G070500 I 0.693
Bostr.19424s0320 Boechera stricta Bostr.19424s0320 I 0.691
POPTR_0014s04620 Populus trichocarpa POPTR_0014s04620 I 0.691
TCM_005704 Theobroma cacao TCM_005704 I 0.691
scaffold_604310.1 Arabidopsis lyrata scaffold_604310.1 I 0.691
Ca_20349 Cicer arietinum Ca_20349 I 0.691
Cagra.8559s0002 Capsella grandiflora Cagra.8559s0002 I 0.691
ERF098 Arabidopsis thaliana AT3G23230 D 0.691
Eucgr.B01541 Eucalyptus grandis Eucgr.B01541 I 0.691
Carubv10015406m.g Capsella rubella Carubv10015406m.g I 0.691
MTR_8g006825 Medicago truncatula MTR_8g006825 I 0.690
MTR_1g040430 Medicago truncatula MTR_1g040430 I 0.689
PGSC0003DMG400017231 Solanum tuberosum PGSC0003DMG400017231 I 0.688
Solyc09g066350.1 Solanum lycopersicum Solyc09g066350.1 I 0.687
PGSC0003DMG400010309 Solanum tuberosum PGSC0003DMG400010309 I 0.687
Solyc09g089930.1 Solanum lycopersicum Solyc09g089930.1 I 0.686
Thhalv10001003m.g Eutrema salsugineum Thhalv10001003m.g I 0.686
Bra021048 Brassica rapa Bra021048 I 0.686
MTR_7g081815 Medicago truncatula MTR_7g081815 I 0.686
MTR_7g081805 Medicago truncatula MTR_7g081805 I 0.686
ERF1A Arabidopsis thaliana AT4G17500 D 0.686
PGSC0003DMG400013402 Solanum tuberosum PGSC0003DMG400013402 I 0.686
Bo8g049470 Brassica oleracea Bo8g049470 I 0.686
PGSC0003DMG400014204 Solanum tuberosum PGSC0003DMG400014204 I 0.686
Bra021047 Brassica rapa Bra021047 I 0.686
Solyc03g005520.1 Solanum lycopersicum Solyc03g005520.1 I 0.686
Cagra.3675s0007 Capsella grandiflora Cagra.3675s0007 I 0.686
Carubv10005497m.g Capsella rubella Carubv10005497m.g I 0.686
Cagra.3356s0041 Capsella grandiflora Cagra.3356s0041 I 0.686
Bostr.30275s0207 Boechera stricta Bostr.30275s0207 I 0.686
ATERF-1 Arabidopsis lyrata fgenesh2_kg.7__2559__AT4G17500.1 I 0.686
Aquca_067_00004 Aquilegia coerulea Aquca_067_00004 I 0.686
Carubv10027108m.g Capsella rubella Carubv10027108m.g I 0.686
Ca_06032 Cicer arietinum Ca_06032 I 0.686
Cla010886 Citrullus lanatus Cla010886 I 0.686
Bostr.14419s0016 Boechera stricta Bostr.14419s0016 I 0.685
mgf021973m Mimulus guttatus mgf021973m I 0.685
PGSC0003DMG400040573 Solanum tuberosum PGSC0003DMG400040573 I 0.684
Thhalv10029212m.g Eutrema salsugineum Thhalv10029212m.g I 0.682
PGSC0003DMG400041045 Solanum tuberosum PGSC0003DMG400041045 I 0.681
Bra022115 Brassica rapa Bra022115 I 0.681
fgenesh2_kg.471__1__AT3G23230.1 Arabidopsis lyrata fgenesh2_kg.471__1__AT3G23230.1 I 0.681
Bo2g132270 Brassica oleracea Bo2g132270 I 0.681
Solyc01g090310.2 Solanum lycopersicum Solyc01g090310.2 I 0.681
mgf025885m Mimulus guttatus mgf025885m I 0.681
fgenesh2_kg.3__2538__AT3G23230.1 Arabidopsis lyrata fgenesh2_kg.3__2538__AT3G23230.1 I 0.681
Bo1g017590 Brassica oleracea Bo1g017590 I 0.680
Solyc03g093530.1 Solanum lycopersicum Solyc03g093530.1 I 0.680
Bo9g001020 Brassica oleracea Bo9g001020 I 0.680
GLYMA03G26437 Glycine max GLYMA03G26437 I 0.680
Cla003706 Citrullus lanatus Cla003706 I 0.679
Cucsa.129630 Cucumis sativus Cucsa.129630 I 0.679
Pm017697 Prunus mume Pm017697 I 0.679
PRUPE_ppa020417mg Prunus persica PRUPE_ppa020417mg I 0.679
SapurV1A.0007s0970 Salix purpurea SapurV1A.0007s0970 I 0.678
Ca_06034 Cicer arietinum Ca_06034 I 0.678
GSMUA_Achr11G20930_001 Musa acuminata GSMUA_Achr11G20930_001 I 0.677
GLYMA11G03910 Glycine max GLYMA11G03910 I 0.677
LjSGA_146586.1 Lotus japonicus LjSGA_146586.1 I 0.677
MTR_4g100380 Medicago truncatula MTR_4g100380 I 0.677
PK29475.1 Cannabis sativa PK29475.1 I 0.677
GSMUA_Achr5G21050_001 Musa acuminata GSMUA_Achr5G21050_001 I 0.677
SapurV1A.1153s0050 Salix purpurea SapurV1A.1153s0050 I 0.677
GLYMA17G15480 Glycine max GLYMA17G15480 I 0.677
orange1.1g044938m.g Citrus sinensis orange1.1g044938m.g I 0.677
MDP0000787281 Malus domestica MDP0000787281 I 0.677
MDP0000299277 Malus domestica MDP0000299277 I 0.677
MDP0000665685 Malus domestica MDP0000665685 I 0.677
gene10841-v1.0-hybrid Fragaria vesca gene10841-v1.0-hybrid I 0.677
Ciclev10021652m.g Citrus clementina Ciclev10021652m.g I 0.677
VIT_02s0234g00130 Vitis vinifera VIT_02s0234g00130 I 0.677
TCM_015898 Theobroma cacao TCM_015898 I 0.677
GLYMA01G41520 Glycine max GLYMA01G41520 I 0.677
Cla005705 Citrullus lanatus Cla005705 I 0.677
Cucsa.321160 Cucumis sativus Cucsa.321160 I 0.677
GLYMA05G05180 Glycine max GLYMA05G05180 I 0.677
PRUPE_ppa009707mg Prunus persica PRUPE_ppa009707mg I 0.677
POPTR_0003s07910 Populus trichocarpa POPTR_0003s07910 I 0.677
Lus10004368.g Linum usitatissimum Lus10004368.g I 0.677
28192.m000255 Ricinus communis 28192.m000255 I 0.677
PGSC0003DMG400026049 Solanum tuberosum PGSC0003DMG400026049 I 0.677
Gorai.006G214100 Gossypium raimondii Gorai.006G214100 I 0.677
cassava4871.m1 Manihot esculenta cassava4871.m1 I 0.677
POPTR_0001s15390 Populus trichocarpa POPTR_0001s15390 I 0.677
Pm023376 Prunus mume Pm023376 I 0.677