Lus10016223.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10016223.g T008806_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.763 0.792
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.763 0.792
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.763 0.792
ERF098
M01618_2.00 		Arabidopsis thaliana
NNGCCGNC
GNCGGCNN		 PBM
Weirauch et al.(2014)
pTH8259 		0.699 0.750
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.695 0.729
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.695 0.729
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.677 0.708
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.677 0.708
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.677 0.708
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10016223 AP2 68 119

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10029319.g Linum usitatissimum Lus10029319.g I 0.843
Lus10016227.g Linum usitatissimum Lus10016227.g I 0.817
Lus10029314.g Linum usitatissimum Lus10029314.g I 0.817
Lus10016224.g Linum usitatissimum Lus10016224.g I 0.814
Lus10029318.g Linum usitatissimum Lus10029318.g I 0.814
Lus10029331.g Linum usitatissimum Lus10029331.g I 0.802
Gorai.008G108500 Gossypium raimondii Gorai.008G108500 I 0.793
Lus10016212.g Linum usitatissimum Lus10016212.g I 0.792
Lus10016210.g Linum usitatissimum Lus10016210.g I 0.791
Lus10029333.g Linum usitatissimum Lus10029333.g I 0.791
TCM_005705 Theobroma cacao TCM_005705 I 0.789
Lus10016209.g Linum usitatissimum Lus10016209.g I 0.785
cassava19881.m1 Manihot esculenta cassava19881.m1 I 0.783
POPTR_0014s04600 Populus trichocarpa POPTR_0014s04600 I 0.783
Lus10016225.g Linum usitatissimum Lus10016225.g I 0.783
Gorai.004G165800 Gossypium raimondii Gorai.004G165800 I 0.782
Lus10029334.g Linum usitatissimum Lus10029334.g I 0.780
cassava19882.m1 Manihot esculenta cassava19882.m1 I 0.779
Cla021383 Citrullus lanatus Cla021383 I 0.773
30174.m008756 Ricinus communis 30174.m008756 I 0.771
Lus10030261.g Linum usitatissimum Lus10030261.g I 0.769
Lus10004011.g Linum usitatissimum Lus10004011.g I 0.769
Gorai.007G086000 Gossypium raimondii Gorai.007G086000 I 0.768
POPTR_0014s04610 Populus trichocarpa POPTR_0014s04610 I 0.768
GLYMA07G14070 Glycine max GLYMA07G14070 I 0.767
cassava19883.m1 Manihot esculenta cassava19883.m1 I 0.767
30174.m008755 Ricinus communis 30174.m008755 I 0.766
ERF13 Arabidopsis thaliana AT2G44840 D 0.763
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.763
Bra037630 Brassica rapa Bra037630 I 0.763
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.763
Bra004873 Brassica rapa Bra004873 I 0.763
Bo4g024140 Brassica oleracea Bo4g024140 I 0.763
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.763
Bo4g195220 Brassica oleracea Bo4g195220 I 0.763
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.763
TCM_005706 Theobroma cacao TCM_005706 I 0.763
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.762
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I 0.760
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I 0.760
Eucgr.G00393 Eucalyptus grandis Eucgr.G00393 I 0.760
Eucgr.G00396 Eucalyptus grandis Eucgr.G00396 I 0.760
Eucgr.G00394 Eucalyptus grandis Eucgr.G00394 I 0.760
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.758
Eucgr.G00388 Eucalyptus grandis Eucgr.G00388 I 0.757
Eucgr.G00392 Eucalyptus grandis Eucgr.G00392 I 0.754
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I 0.754
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I 0.753
Pm017696 Prunus mume Pm017696 I 0.753
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I 0.751
Eucgr.G00390 Eucalyptus grandis Eucgr.G00390 I 0.750
Eucgr.G00391 Eucalyptus grandis Eucgr.G00391 I 0.750
Pm017699 Prunus mume Pm017699 I 0.750
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.749
Cucsa.260030 Cucumis sativus Cucsa.260030 I 0.747
Thhalv10022108m.g Eutrema salsugineum Thhalv10022108m.g I 0.746
Eucgr.G00943 Eucalyptus grandis Eucgr.G00943 I 0.746
TCM_005707 Theobroma cacao TCM_005707 I 0.745
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I 0.745
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I 0.744
Bo7g040810 Brassica oleracea Bo7g040810 I 0.743
Bra014925 Brassica rapa Bra014925 I 0.743
POPTR_0014s04630 Populus trichocarpa POPTR_0014s04630 I 0.740
evm.TU.supercontig_101.15 Carica papaya evm.TU.supercontig_101.15 I 0.737
Bo1g102220 Brassica oleracea Bo1g102220 I 0.734
Bra023748 Brassica rapa Bra023748 I 0.734
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.734
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.732
Gorai.008G108600 Gossypium raimondii Gorai.008G108600 I 0.730
Ca_17212 Cicer arietinum Ca_17212 I 0.729
30174.m008759 Ricinus communis 30174.m008759 I 0.729
Cucsa.260040 Cucumis sativus Cucsa.260040 I 0.729
SapurV1A.0124s0180 Salix purpurea SapurV1A.0124s0180 I 0.725
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.725
Eucgr.E01571 Eucalyptus grandis Eucgr.E01571 I 0.721
GLYMA03G26310 Glycine max GLYMA03G26310 I 0.721
GLYMA03G26520 Glycine max GLYMA03G26520 I 0.718
GLYMA03G26530 Glycine max GLYMA03G26530 I 0.718
MDP0000135205 Malus domestica MDP0000135205 I 0.718
MDP0000122665 Malus domestica MDP0000122665 I 0.718
Gorai.007G086100 Gossypium raimondii Gorai.007G086100 I 0.718
Pm017698 Prunus mume Pm017698 I 0.717
gene04916-v1.0-hybrid Fragaria vesca gene04916-v1.0-hybrid I 0.717
MDP0000178398 Malus domestica MDP0000178398 I 0.717
PRUPE_ppa023698mg Prunus persica PRUPE_ppa023698mg I 0.717
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I 0.716
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I 0.716
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I 0.716
GSMUA_Achr5G12530_001 Musa acuminata GSMUA_Achr5G12530_001 I 0.716
Ca_02325 Cicer arietinum Ca_02325 I 0.714
Pm017700 Prunus mume Pm017700 I 0.714
Cla021384 Citrullus lanatus Cla021384 I 0.713
Bostr.25993s0288 Boechera stricta Bostr.25993s0288 I 0.713
mgf021756m Mimulus guttatus mgf021756m I 0.711
Bostr.14547s0008 Boechera stricta Bostr.14547s0008 I 0.708
PGSC0003DMG400026046 Solanum tuberosum PGSC0003DMG400026046 I 0.707
Ca_17211 Cicer arietinum Ca_17211 I 0.707
Lus10013959.g Linum usitatissimum Lus10013959.g I 0.705
VIT_15s0021g01630 Vitis vinifera VIT_15s0021g01630 I 0.705
PRUPE_ppa025748mg Prunus persica PRUPE_ppa025748mg I 0.705
Solyc01g090370.1 Solanum lycopersicum Solyc01g090370.1 I 0.704
MTR_8g006840 Medicago truncatula MTR_8g006840 I 0.703
chr3.CM0080.200.nd Lotus japonicus chr3.CM0080.200.nd I 0.703
Gorai.004G070600 Gossypium raimondii Gorai.004G070600 I 0.703
Gorai.008G108400 Gossypium raimondii Gorai.008G108400 I 0.702
Gorai.004G070800 Gossypium raimondii Gorai.004G070800 I 0.701
Gorai.004G070500 Gossypium raimondii Gorai.004G070500 I 0.701
Carubv10005868m.g Capsella rubella Carubv10005868m.g I 0.701
Cagra.4714s0001 Capsella grandiflora Cagra.4714s0001 I 0.701
POPTR_0014s04620 Populus trichocarpa POPTR_0014s04620 I 0.699
Carubv10015406m.g Capsella rubella Carubv10015406m.g I 0.699
Cagra.8559s0002 Capsella grandiflora Cagra.8559s0002 I 0.699
Bostr.19424s0320 Boechera stricta Bostr.19424s0320 I 0.699
ERF098 Arabidopsis thaliana AT3G23230 D 0.699
TCM_005704 Theobroma cacao TCM_005704 I 0.699
Eucgr.B01541 Eucalyptus grandis Eucgr.B01541 I 0.699
Eucgr.E01561 Eucalyptus grandis Eucgr.E01561 I 0.699
scaffold_604310.1 Arabidopsis lyrata scaffold_604310.1 I 0.699
e_gw1.53.114.1 Physcomitrella patens e_gw1.53.114.1 I 0.698
MTR_8g006825 Medicago truncatula MTR_8g006825 I 0.698
e_gw1.72.116.1 Physcomitrella patens e_gw1.72.116.1 I 0.698
PGSC0003DMG400017231 Solanum tuberosum PGSC0003DMG400017231 I 0.696
Bra021047 Brassica rapa Bra021047 I 0.695
Bo8g049470 Brassica oleracea Bo8g049470 I 0.695
Cagra.3356s0041 Capsella grandiflora Cagra.3356s0041 I 0.695
Bostr.30275s0207 Boechera stricta Bostr.30275s0207 I 0.695
ATERF-1 Arabidopsis lyrata fgenesh2_kg.7__2559__AT4G17500.1 I 0.695
Carubv10005497m.g Capsella rubella Carubv10005497m.g I 0.695
Thhalv10001003m.g Eutrema salsugineum Thhalv10001003m.g I 0.695
Carubv10027108m.g Capsella rubella Carubv10027108m.g I 0.695
Cagra.3675s0007 Capsella grandiflora Cagra.3675s0007 I 0.695
Bra021048 Brassica rapa Bra021048 I 0.695
Aquca_067_00004 Aquilegia coerulea Aquca_067_00004 I 0.695
ERF1A Arabidopsis thaliana AT4G17500 D 0.695
Solyc09g066350.1 Solanum lycopersicum Solyc09g066350.1 I 0.695
PGSC0003DMG400010309 Solanum tuberosum PGSC0003DMG400010309 I 0.695
Solyc03g005520.1 Solanum lycopersicum Solyc03g005520.1 I 0.694
Solyc09g089930.1 Solanum lycopersicum Solyc09g089930.1 I 0.694
Cla010886 Citrullus lanatus Cla010886 I 0.694
MTR_7g081815 Medicago truncatula MTR_7g081815 I 0.694
MTR_7g081805 Medicago truncatula MTR_7g081805 I 0.694
Ca_06032 Cicer arietinum Ca_06032 I 0.694
PGSC0003DMG400013402 Solanum tuberosum PGSC0003DMG400013402 I 0.694
PGSC0003DMG400014204 Solanum tuberosum PGSC0003DMG400014204 I 0.694
Bostr.14419s0016 Boechera stricta Bostr.14419s0016 I 0.693
mgf021973m Mimulus guttatus mgf021973m I 0.693
PGSC0003DMG400040573 Solanum tuberosum PGSC0003DMG400040573 I 0.692
Ca_20349 Cicer arietinum Ca_20349 I 0.691
Thhalv10029212m.g Eutrema salsugineum Thhalv10029212m.g I 0.690
PGSC0003DMG400041045 Solanum tuberosum PGSC0003DMG400041045 I 0.690
Solyc01g090310.2 Solanum lycopersicum Solyc01g090310.2 I 0.690
Bo2g132270 Brassica oleracea Bo2g132270 I 0.689
fgenesh2_kg.3__2538__AT3G23230.1 Arabidopsis lyrata fgenesh2_kg.3__2538__AT3G23230.1 I 0.689
fgenesh2_kg.471__1__AT3G23230.1 Arabidopsis lyrata fgenesh2_kg.471__1__AT3G23230.1 I 0.689
MTR_1g040430 Medicago truncatula MTR_1g040430 I 0.689
Bra022115 Brassica rapa Bra022115 I 0.689
Bo9g001020 Brassica oleracea Bo9g001020 I 0.688
Bo1g017590 Brassica oleracea Bo1g017590 I 0.688
GLYMA03G26437 Glycine max GLYMA03G26437 I 0.688
PRUPE_ppa020417mg Prunus persica PRUPE_ppa020417mg I 0.687
Cla003706 Citrullus lanatus Cla003706 I 0.687
Cucsa.129630 Cucumis sativus Cucsa.129630 I 0.687
Pm017697 Prunus mume Pm017697 I 0.687
Ca_06034 Cicer arietinum Ca_06034 I 0.686
SapurV1A.0007s0970 Salix purpurea SapurV1A.0007s0970 I 0.686
MDP0000787281 Malus domestica MDP0000787281 I 0.685
Lus10004368.g Linum usitatissimum Lus10004368.g I 0.685
Gorai.006G214100 Gossypium raimondii Gorai.006G214100 I 0.685
MDP0000665685 Malus domestica MDP0000665685 I 0.685
LjSGA_146586.1 Lotus japonicus LjSGA_146586.1 I 0.685
SapurV1A.1153s0050 Salix purpurea SapurV1A.1153s0050 I 0.685
orange1.1g044938m.g Citrus sinensis orange1.1g044938m.g I 0.685
MDP0000299277 Malus domestica MDP0000299277 I 0.685
PK29475.1 Cannabis sativa PK29475.1 I 0.685
28192.m000255 Ricinus communis 28192.m000255 I 0.685
POPTR_0003s07910 Populus trichocarpa POPTR_0003s07910 I 0.685
POPTR_0001s15390 Populus trichocarpa POPTR_0001s15390 I 0.685
PRUPE_ppa009707mg Prunus persica PRUPE_ppa009707mg I 0.685
TCM_015898 Theobroma cacao TCM_015898 I 0.685
Cla005705 Citrullus lanatus Cla005705 I 0.685
GLYMA11G03910 Glycine max GLYMA11G03910 I 0.685
PGSC0003DMG400026049 Solanum tuberosum PGSC0003DMG400026049 I 0.685
MTR_4g100380 Medicago truncatula MTR_4g100380 I 0.685
GLYMA05G05180 Glycine max GLYMA05G05180 I 0.685
GLYMA17G15480 Glycine max GLYMA17G15480 I 0.685
GLYMA01G41520 Glycine max GLYMA01G41520 I 0.685
GSMUA_Achr11G20930_001 Musa acuminata GSMUA_Achr11G20930_001 I 0.685
GSMUA_Achr5G21050_001 Musa acuminata GSMUA_Achr5G21050_001 I 0.685
Pm023376 Prunus mume Pm023376 I 0.685
VIT_02s0234g00130 Vitis vinifera VIT_02s0234g00130 I 0.685
Cucsa.321160 Cucumis sativus Cucsa.321160 I 0.685
gene10841-v1.0-hybrid Fragaria vesca gene10841-v1.0-hybrid I 0.685
cassava4871.m1 Manihot esculenta cassava4871.m1 I 0.685
Ciclev10021652m.g Citrus clementina Ciclev10021652m.g I 0.685
Cla021851 Citrullus lanatus Cla021851 I 0.684
Bo8g115580 Brassica oleracea Bo8g115580 I 0.683
Bra032512 Brassica rapa Bra032512 I 0.683
gene08075-v1.0-hybrid Fragaria vesca gene08075-v1.0-hybrid I 0.683
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.683
Pm020605 Prunus mume Pm020605 I 0.682
orange1.1g047100m.g Citrus sinensis orange1.1g047100m.g I 0.682
Ciclev10022025m.g Citrus clementina Ciclev10022025m.g I 0.682
PRUPE_ppa020642mg Prunus persica PRUPE_ppa020642mg I 0.682
mgf026487m Mimulus guttatus mgf026487m I 0.681
Bra040159 Brassica rapa Bra040159 I 0.681
mgf025885m Mimulus guttatus mgf025885m I 0.681
MTR_7g081795 Medicago truncatula MTR_7g081795 I 0.681
PGSC0003DMG400007027 Solanum tuberosum PGSC0003DMG400007027 I 0.681
Solyc03g093530.1 Solanum lycopersicum Solyc03g093530.1 I 0.680
Gorai.001G252400 Gossypium raimondii Gorai.001G252400 I 0.680
Lus10016211.g Linum usitatissimum Lus10016211.g I 0.679
Gorai.004G195200 Gossypium raimondii Gorai.004G195200 I 0.678
Gorai.004G195000 Gossypium raimondii Gorai.004G195000 I 0.678
Gorai.004G195100 Gossypium raimondii Gorai.004G195100 I 0.678
Gorai.008G232500 Gossypium raimondii Gorai.008G232500 I 0.678
Ca_12775 Cicer arietinum Ca_12775 I 0.678
ERF2 Arabidopsis thaliana AT5G47220 D 0.677
Si030692m.g Setaria italica Si030692m.g I 0.677
Sb06g024355 Sorghum bicolor Sb06g024355 I 0.677
Solyc05g050790.1 Solanum lycopersicum Solyc05g050790.1 I 0.677
Pavir.Ga01099 Panicum virgatum Pavir.Ga01099 I 0.677
Pavir.Gb00956 Panicum virgatum Pavir.Gb00956 I 0.677
GRMZM2G080516 Zea mays GRMZM2G080516 I 0.677
GRMZM2G055180 Zea mays GRMZM2G055180 I 0.677