Lus10029314.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10029314.g T008863_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.737 0.776
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.737 0.776
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.737 0.776
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.688 0.735
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.688 0.735
ERF098
M01618_2.00 		Arabidopsis thaliana
NNGCCGNC
GNCGGCNN		 PBM
Weirauch et al.(2014)
pTH8259 		0.685 0.714
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10029314 AP2 98 150

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10016227.g Linum usitatissimum Lus10016227.g I 0.854
Lus10016223.g Linum usitatissimum Lus10016223.g I 0.817
Lus10029319.g Linum usitatissimum Lus10029319.g I 0.809
Gorai.008G108500 Gossypium raimondii Gorai.008G108500 I 0.793
Lus10016210.g Linum usitatissimum Lus10016210.g I 0.792
Lus10029333.g Linum usitatissimum Lus10029333.g I 0.791
Lus10016225.g Linum usitatissimum Lus10016225.g I 0.784
Gorai.004G165800 Gossypium raimondii Gorai.004G165800 I 0.782
Lus10029318.g Linum usitatissimum Lus10029318.g I 0.781
Lus10029331.g Linum usitatissimum Lus10029331.g I 0.781
Lus10016224.g Linum usitatissimum Lus10016224.g I 0.781
TCM_005705 Theobroma cacao TCM_005705 I 0.773
Lus10016209.g Linum usitatissimum Lus10016209.g I 0.773
Lus10016212.g Linum usitatissimum Lus10016212.g I 0.771
POPTR_0014s04610 Populus trichocarpa POPTR_0014s04610 I 0.771
Lus10030261.g Linum usitatissimum Lus10030261.g I 0.769
Lus10004011.g Linum usitatissimum Lus10004011.g I 0.769
GLYMA07G14070 Glycine max GLYMA07G14070 I 0.768
Lus10029334.g Linum usitatissimum Lus10029334.g I 0.764
POPTR_0014s04630 Populus trichocarpa POPTR_0014s04630 I 0.759
30174.m008759 Ricinus communis 30174.m008759 I 0.758
TCM_005706 Theobroma cacao TCM_005706 I 0.754
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I 0.754
Eucgr.G00394 Eucalyptus grandis Eucgr.G00394 I 0.752
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I 0.752
Eucgr.G00396 Eucalyptus grandis Eucgr.G00396 I 0.752
Eucgr.G00393 Eucalyptus grandis Eucgr.G00393 I 0.751
Gorai.007G086000 Gossypium raimondii Gorai.007G086000 I 0.751
cassava19881.m1 Manihot esculenta cassava19881.m1 I 0.749
POPTR_0014s04600 Populus trichocarpa POPTR_0014s04600 I 0.749
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I 0.748
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.748
Pm017696 Prunus mume Pm017696 I 0.748
Eucgr.G00392 Eucalyptus grandis Eucgr.G00392 I 0.746
Eucgr.G00943 Eucalyptus grandis Eucgr.G00943 I 0.746
cassava19882.m1 Manihot esculenta cassava19882.m1 I 0.746
evm.TU.supercontig_101.15 Carica papaya evm.TU.supercontig_101.15 I 0.745
Pm017699 Prunus mume Pm017699 I 0.744
30174.m008756 Ricinus communis 30174.m008756 I 0.744
Eucgr.G00390 Eucalyptus grandis Eucgr.G00390 I 0.742
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.742
Eucgr.G00391 Eucalyptus grandis Eucgr.G00391 I 0.742
Eucgr.G00388 Eucalyptus grandis Eucgr.G00388 I 0.740
30174.m008755 Ricinus communis 30174.m008755 I 0.740
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I 0.740
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I 0.739
Cla021383 Citrullus lanatus Cla021383 I 0.739
TCM_005707 Theobroma cacao TCM_005707 I 0.738
Bo4g195220 Brassica oleracea Bo4g195220 I 0.737
Bo4g024140 Brassica oleracea Bo4g024140 I 0.737
Bra004873 Brassica rapa Bra004873 I 0.737
Bra037630 Brassica rapa Bra037630 I 0.737
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.737
ERF13 Arabidopsis thaliana AT2G44840 D 0.737
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.737
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.737
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.737
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.737
cassava19883.m1 Manihot esculenta cassava19883.m1 I 0.733
Thhalv10022108m.g Eutrema salsugineum Thhalv10022108m.g I 0.732
Bra014925 Brassica rapa Bra014925 I 0.730
Bo7g040810 Brassica oleracea Bo7g040810 I 0.730
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I 0.727
MDP0000178398 Malus domestica MDP0000178398 I 0.727
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.725
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I 0.724
Cucsa.260030 Cucumis sativus Cucsa.260030 I 0.720
Bra023748 Brassica rapa Bra023748 I 0.720
Bo1g102220 Brassica oleracea Bo1g102220 I 0.720
GLYMA03G26530 Glycine max GLYMA03G26530 I 0.719
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.719
Gorai.008G108600 Gossypium raimondii Gorai.008G108600 I 0.714
GLYMA03G26310 Glycine max GLYMA03G26310 I 0.713
Eucgr.E01571 Eucalyptus grandis Eucgr.E01571 I 0.713
PRUPE_ppa023698mg Prunus persica PRUPE_ppa023698mg I 0.712
Gorai.004G070600 Gossypium raimondii Gorai.004G070600 I 0.712
Pm017698 Prunus mume Pm017698 I 0.712
gene04916-v1.0-hybrid Fragaria vesca gene04916-v1.0-hybrid I 0.711
MDP0000135205 Malus domestica MDP0000135205 I 0.711
MDP0000122665 Malus domestica MDP0000122665 I 0.711
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.710
Ca_17212 Cicer arietinum Ca_17212 I 0.708
Ca_02325 Cicer arietinum Ca_02325 I 0.708
Pm017700 Prunus mume Pm017700 I 0.708
Gorai.004G070500 Gossypium raimondii Gorai.004G070500 I 0.708
Bostr.14547s0008 Boechera stricta Bostr.14547s0008 I 0.708
Gorai.004G070800 Gossypium raimondii Gorai.004G070800 I 0.708
TCM_005704 Theobroma cacao TCM_005704 I 0.707
e_gw1.53.114.1 Physcomitrella patens e_gw1.53.114.1 I 0.706
e_gw1.72.116.1 Physcomitrella patens e_gw1.72.116.1 I 0.706
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I 0.705
GLYMA03G26520 Glycine max GLYMA03G26520 I 0.705
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I 0.705
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I 0.705
Solyc03g005520.1 Solanum lycopersicum Solyc03g005520.1 I 0.703
Ca_17211 Cicer arietinum Ca_17211 I 0.703
PGSC0003DMG400014204 Solanum tuberosum PGSC0003DMG400014204 I 0.703
PGSC0003DMG400013402 Solanum tuberosum PGSC0003DMG400013402 I 0.703
Cagra.4714s0001 Capsella grandiflora Cagra.4714s0001 I 0.701
Carubv10005868m.g Capsella rubella Carubv10005868m.g I 0.701
PRUPE_ppa025748mg Prunus persica PRUPE_ppa025748mg I 0.700
mgf021756m Mimulus guttatus mgf021756m I 0.699
scaffold_604310.1 Arabidopsis lyrata scaffold_604310.1 I 0.699
MTR_8g006840 Medicago truncatula MTR_8g006840 I 0.698
Gorai.007G086100 Gossypium raimondii Gorai.007G086100 I 0.697
Lus10013959.g Linum usitatissimum Lus10013959.g I 0.697
Pm017697 Prunus mume Pm017697 I 0.696
PRUPE_ppa020417mg Prunus persica PRUPE_ppa020417mg I 0.696
Cucsa.260040 Cucumis sativus Cucsa.260040 I 0.694
Gorai.008G108400 Gossypium raimondii Gorai.008G108400 I 0.694
VIT_15s0021g01630 Vitis vinifera VIT_15s0021g01630 I 0.693
GSMUA_Achr5G12530_001 Musa acuminata GSMUA_Achr5G12530_001 I 0.692
SapurV1A.0124s0180 Salix purpurea SapurV1A.0124s0180 I 0.690
Thhalv10029212m.g Eutrema salsugineum Thhalv10029212m.g I 0.690
chr3.CM0080.200.nd Lotus japonicus chr3.CM0080.200.nd I 0.690
PGSC0003DMG400017231 Solanum tuberosum PGSC0003DMG400017231 I 0.689
Bo8g049470 Brassica oleracea Bo8g049470 I 0.688
Thhalv10001003m.g Eutrema salsugineum Thhalv10001003m.g I 0.688
Bra021048 Brassica rapa Bra021048 I 0.688
ERF1A Arabidopsis thaliana AT4G17500 D 0.688
Bra021047 Brassica rapa Bra021047 I 0.688
ATERF-1 Arabidopsis lyrata fgenesh2_kg.7__2559__AT4G17500.1 I 0.688
Carubv10005497m.g Capsella rubella Carubv10005497m.g I 0.688
Cagra.3356s0041 Capsella grandiflora Cagra.3356s0041 I 0.688
Bostr.30275s0207 Boechera stricta Bostr.30275s0207 I 0.688
Aquca_067_00004 Aquilegia coerulea Aquca_067_00004 I 0.688
Carubv10027108m.g Capsella rubella Carubv10027108m.g I 0.688
Cagra.3675s0007 Capsella grandiflora Cagra.3675s0007 I 0.688
Bostr.25993s0288 Boechera stricta Bostr.25993s0288 I 0.687
Solyc09g089930.1 Solanum lycopersicum Solyc09g089930.1 I 0.687
Bostr.14419s0016 Boechera stricta Bostr.14419s0016 I 0.686
PGSC0003DMG400026046 Solanum tuberosum PGSC0003DMG400026046 I 0.686
Cla021384 Citrullus lanatus Cla021384 I 0.686
Cagra.8559s0002 Capsella grandiflora Cagra.8559s0002 I 0.685
ERF098 Arabidopsis thaliana AT3G23230 D 0.685
Bostr.19424s0320 Boechera stricta Bostr.19424s0320 I 0.685
MTR_8g006825 Medicago truncatula MTR_8g006825 I 0.685
Carubv10015406m.g Capsella rubella Carubv10015406m.g I 0.685
Eucgr.E01561 Eucalyptus grandis Eucgr.E01561 I 0.684
Solyc01g090370.1 Solanum lycopersicum Solyc01g090370.1 I 0.684
POPTR_0014s04620 Populus trichocarpa POPTR_0014s04620 I 0.684
Bra022115 Brassica rapa Bra022115 I 0.683
Bo2g132270 Brassica oleracea Bo2g132270 I 0.683
GLYMA03G26437 Glycine max GLYMA03G26437 I 0.682
Bo1g017590 Brassica oleracea Bo1g017590 I 0.681
Cla010886 Citrullus lanatus Cla010886 I 0.681
PGSC0003DMG400010309 Solanum tuberosum PGSC0003DMG400010309 I 0.681
PGSC0003DMG400040573 Solanum tuberosum PGSC0003DMG400040573 I 0.681
chr5.CM0494.320.nc Lotus japonicus chr5.CM0494.320.nc I 0.681
Solyc09g066350.1 Solanum lycopersicum Solyc09g066350.1 I 0.681
Lus10016211.g Linum usitatissimum Lus10016211.g I 0.680
Cucsa.129630 Cucumis sativus Cucsa.129630 I 0.680
Cla003706 Citrullus lanatus Cla003706 I 0.680
Ca_20349 Cicer arietinum Ca_20349 I 0.679
MDP0000787281 Malus domestica MDP0000787281 I 0.678
LjSGA_146586.1 Lotus japonicus LjSGA_146586.1 I 0.678
MDP0000665685 Malus domestica MDP0000665685 I 0.678
MDP0000299277 Malus domestica MDP0000299277 I 0.678
SapurV1A.1153s0050 Salix purpurea SapurV1A.1153s0050 I 0.678
PK29475.1 Cannabis sativa PK29475.1 I 0.678
orange1.1g044938m.g Citrus sinensis orange1.1g044938m.g I 0.678
Ciclev10021652m.g Citrus clementina Ciclev10021652m.g I 0.678
Pm023376 Prunus mume Pm023376 I 0.678
28192.m000255 Ricinus communis 28192.m000255 I 0.678
GLYMA17G15480 Glycine max GLYMA17G15480 I 0.678
cassava4871.m1 Manihot esculenta cassava4871.m1 I 0.678
MTR_4g100380 Medicago truncatula MTR_4g100380 I 0.678
Cla005705 Citrullus lanatus Cla005705 I 0.678
GSMUA_Achr5G21050_001 Musa acuminata GSMUA_Achr5G21050_001 I 0.678
TCM_015898 Theobroma cacao TCM_015898 I 0.678
VIT_02s0234g00130 Vitis vinifera VIT_02s0234g00130 I 0.678
mgf021973m Mimulus guttatus mgf021973m I 0.678
Cucsa.321160 Cucumis sativus Cucsa.321160 I 0.678
gene10841-v1.0-hybrid Fragaria vesca gene10841-v1.0-hybrid I 0.678
Gorai.006G214100 Gossypium raimondii Gorai.006G214100 I 0.678
POPTR_0001s15390 Populus trichocarpa POPTR_0001s15390 I 0.678
Lus10004368.g Linum usitatissimum Lus10004368.g I 0.678
GLYMA01G41520 Glycine max GLYMA01G41520 I 0.678
POPTR_0003s07910 Populus trichocarpa POPTR_0003s07910 I 0.678
PRUPE_ppa009707mg Prunus persica PRUPE_ppa009707mg I 0.678
GLYMA11G03910 Glycine max GLYMA11G03910 I 0.678
GLYMA05G05180 Glycine max GLYMA05G05180 I 0.678
Solyc01g090310.2 Solanum lycopersicum Solyc01g090310.2 I 0.677
MTR_1g040430 Medicago truncatula MTR_1g040430 I 0.677
GSMUA_Achr11G20930_001 Musa acuminata GSMUA_Achr11G20930_001 I 0.677
PGSC0003DMG400041045 Solanum tuberosum PGSC0003DMG400041045 I 0.677