CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
MTR_8g006840
(
Medicago truncatula
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
MTR_8g006840
T002951_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.717
0.837
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.717
0.837
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.717
0.837
ERF098
M01618_2.00
Arabidopsis thaliana
NNGCCGNC
GNCGGCNN
PBM
Weirauch et al.(2014)
pTH8259
0.698
0.755
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH17840
AP2
123
175
LGYRGVRRRPWGKYAAEIRDPKRNGARVWLGTYETAENAALAYDRAAFKIRGS
Links
Other
AP2
family TFs
Other
Medicago truncatula
TFs
135 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_17211
Cicer arietinum
Ca_17211
I
0.820
orange1.1g044584m.g
Citrus sinensis
orange1.1g044584m.g
I
0.751
Lus10016209.g
Linum usitatissimum
Lus10016209.g
I
0.750
Gorai.004G070600
Gossypium raimondii
Gorai.004G070600
I
0.738
GLYMA07G13980
Glycine max
GLYMA07G13980
I
0.737
TCM_005705
Theobroma cacao
TCM_005705
I
0.736
Gorai.004G165800
Gossypium raimondii
Gorai.004G165800
I
0.735
Lus10016210.g
Linum usitatissimum
Lus10016210.g
I
0.730
Cla021383
Citrullus lanatus
Cla021383
I
0.728
Eucgr.G00392
Eucalyptus grandis
Eucgr.G00392
I
0.728
Eucgr.G00397
Eucalyptus grandis
Eucgr.G00397
I
0.728
POPTR_0014s04640
Populus trichocarpa
POPTR_0014s04640
I
0.728
PRUPE_ppb014367mg
Prunus persica
PRUPE_ppb014367mg
I
0.727
Gorai.004G070800
Gossypium raimondii
Gorai.004G070800
I
0.726
Gorai.004G070500
Gossypium raimondii
Gorai.004G070500
I
0.726
TCM_005706
Theobroma cacao
TCM_005706
I
0.725
SapurV1A.0124s0170
Salix purpurea
SapurV1A.0124s0170
I
0.725
Gorai.008G108500
Gossypium raimondii
Gorai.008G108500
I
0.725
Lus10029331.g
Linum usitatissimum
Lus10029331.g
I
0.725
Eucgr.G00002
Eucalyptus grandis
Eucgr.G00002
I
0.722
POPTR_0014s04600
Populus trichocarpa
POPTR_0014s04600
I
0.722
Gorai.007G086000
Gossypium raimondii
Gorai.007G086000
I
0.721
PRUPE_ppa016903mg
Prunus persica
PRUPE_ppa016903mg
I
0.721
Pm017696
Prunus mume
Pm017696
I
0.721
POPTR_0014s04610
Populus trichocarpa
POPTR_0014s04610
I
0.720
cassava19881.m1
Manihot esculenta
cassava19881.m1
I
0.720
chr3.CM0080.200.nd
Lotus japonicus
chr3.CM0080.200.nd
I
0.720
ATERF13
Arabidopsis lyrata
scaffold_403422.1
I
0.717
Cagra.0239s0035
Capsella grandiflora
Cagra.0239s0035
I
0.717
Pm017699
Prunus mume
Pm017699
I
0.717
Lus10030261.g
Linum usitatissimum
Lus10030261.g
I
0.717
ERF13
Arabidopsis thaliana
AT2G44840
D
0.717
Lus10004011.g
Linum usitatissimum
Lus10004011.g
I
0.717
Carubv10023967m.g
Capsella rubella
Carubv10023967m.g
I
0.717
Thhalv10001758m.g
Eutrema salsugineum
Thhalv10001758m.g
I
0.717
Bo4g024140
Brassica oleracea
Bo4g024140
I
0.717
Bra037630
Brassica rapa
Bra037630
I
0.717
Bo4g195220
Brassica oleracea
Bo4g195220
I
0.717
Bra004873
Brassica rapa
Bra004873
I
0.717
Cucsa.260040
Cucumis sativus
Cucsa.260040
I
0.716
MTR_8g006825
Medicago truncatula
MTR_8g006825
I
0.716
Lus10029333.g
Linum usitatissimum
Lus10029333.g
I
0.716
cassava19882.m1
Manihot esculenta
cassava19882.m1
I
0.716
Lus10016212.g
Linum usitatissimum
Lus10016212.g
I
0.715
GLYMA03G26520
Glycine max
GLYMA03G26520
I
0.715
Eucgr.G00390
Eucalyptus grandis
Eucgr.G00390
I
0.714
30174.m008755
Ricinus communis
30174.m008755
I
0.714
Eucgr.G00391
Eucalyptus grandis
Eucgr.G00391
I
0.714
MDP0000153445
Malus domestica
MDP0000153445
I
0.713
gene04917-v1.0-hybrid
Fragaria vesca
gene04917-v1.0-hybrid
I
0.713
MDP0000317950
Malus domestica
MDP0000317950
I
0.713
TCM_005707
Theobroma cacao
TCM_005707
I
0.712
Eucgr.G00388
Eucalyptus grandis
Eucgr.G00388
I
0.712
Thhalv10022108m.g
Eutrema salsugineum
Thhalv10022108m.g
I
0.711
gene04913-v1.0-hybrid
Fragaria vesca
gene04913-v1.0-hybrid
I
0.711
evm.TU.supercontig_101.15
Carica papaya
evm.TU.supercontig_101.15
I
0.711
Lus10029318.g
Linum usitatissimum
Lus10029318.g
I
0.710
Lus10016224.g
Linum usitatissimum
Lus10016224.g
I
0.710
Bo7g040810
Brassica oleracea
Bo7g040810
I
0.709
Bra014925
Brassica rapa
Bra014925
I
0.709
MDP0000907929
Malus domestica
MDP0000907929
I
0.708
MDP0000189033
Malus domestica
MDP0000189033
I
0.708
MDP0000133485
Malus domestica
MDP0000133485
I
0.708
chr3.CM0080.270.nc
Lotus japonicus
chr3.CM0080.270.nc
I
0.707
Lus10016225.g
Linum usitatissimum
Lus10016225.g
I
0.707
Eucgr.G00396
Eucalyptus grandis
Eucgr.G00396
I
0.706
Eucgr.G00394
Eucalyptus grandis
Eucgr.G00394
I
0.706
Eucgr.G00393
Eucalyptus grandis
Eucgr.G00393
I
0.706
Lus10029334.g
Linum usitatissimum
Lus10029334.g
I
0.705
cassava19883.m1
Manihot esculenta
cassava19883.m1
I
0.705
Lus10016223.g
Linum usitatissimum
Lus10016223.g
I
0.703
30174.m008756
Ricinus communis
30174.m008756
I
0.702
Ciclev10022025m.g
Citrus clementina
Ciclev10022025m.g
I
0.701
orange1.1g047100m.g
Citrus sinensis
orange1.1g047100m.g
I
0.701
evm.TU.supercontig_44.73
Carica papaya
evm.TU.supercontig_44.73
I
0.700
Bostr.14547s0008
Boechera stricta
Bostr.14547s0008
I
0.700
Pm017700
Prunus mume
Pm017700
I
0.700
Bo1g102220
Brassica oleracea
Bo1g102220
I
0.699
Bra023748
Brassica rapa
Bra023748
I
0.699
POPTR_0014s04630
Populus trichocarpa
POPTR_0014s04630
I
0.699
VIT_15s0021g01590
Vitis vinifera
VIT_15s0021g01590
I
0.698
VIT_15s0021g01610
Vitis vinifera
VIT_15s0021g01610
I
0.698
VIT_15s0021g01600
Vitis vinifera
VIT_15s0021g01600
I
0.698
ERF098
Arabidopsis thaliana
AT3G23230
D
0.698
Carubv10015406m.g
Capsella rubella
Carubv10015406m.g
I
0.698
Lus10029314.g
Linum usitatissimum
Lus10029314.g
I
0.698
Cagra.8559s0002
Capsella grandiflora
Cagra.8559s0002
I
0.698
Bostr.19424s0320
Boechera stricta
Bostr.19424s0320
I
0.698
Lus10016227.g
Linum usitatissimum
Lus10016227.g
I
0.698
GLYMA03G26310
Glycine max
GLYMA03G26310
I
0.697
Lus10029319.g
Linum usitatissimum
Lus10029319.g
I
0.695
GLYMA18G48730
Glycine max
GLYMA18G48730
I
0.695
Thhalv10029212m.g
Eutrema salsugineum
Thhalv10029212m.g
I
0.694
GLYMA09G37780
Glycine max
GLYMA09G37780
I
0.694
gene04916-v1.0-hybrid
Fragaria vesca
gene04916-v1.0-hybrid
I
0.694
MDP0000122665
Malus domestica
MDP0000122665
I
0.694
MDP0000135205
Malus domestica
MDP0000135205
I
0.694
mgf021973m
Mimulus guttatus
mgf021973m
I
0.693
Pm017698
Prunus mume
Pm017698
I
0.693
PGSC0003DMG400010309
Solanum tuberosum
PGSC0003DMG400010309
I
0.693
Solyc09g066350.1
Solanum lycopersicum
Solyc09g066350.1
I
0.693
30174.m008759
Ricinus communis
30174.m008759
I
0.693
PRUPE_ppa023698mg
Prunus persica
PRUPE_ppa023698mg
I
0.693
MTR_8g006815
Medicago truncatula
MTR_8g006815
I
0.692
Cagra.4714s0001
Capsella grandiflora
Cagra.4714s0001
I
0.692
Carubv10005868m.g
Capsella rubella
Carubv10005868m.g
I
0.692
PRUPE_ppa025748mg
Prunus persica
PRUPE_ppa025748mg
I
0.691
scaffold_604310.1
Arabidopsis lyrata
scaffold_604310.1
I
0.691
MDP0000178398
Malus domestica
MDP0000178398
I
0.691
GLYMA07G14070
Glycine max
GLYMA07G14070
I
0.690
Eucgr.G00943
Eucalyptus grandis
Eucgr.G00943
I
0.690
Cucsa.255330
Cucumis sativus
Cucsa.255330
I
0.689
GLYMA03G26437
Glycine max
GLYMA03G26437
I
0.689
fgenesh2_kg.471__1__AT3G23230.1
Arabidopsis lyrata
fgenesh2_kg.471__1__AT3G23230.1
I
0.688
fgenesh2_kg.3__2538__AT3G23230.1
Arabidopsis lyrata
fgenesh2_kg.3__2538__AT3G23230.1
I
0.688
Gorai.008G108400
Gossypium raimondii
Gorai.008G108400
I
0.687
PRUPE_ppa020417mg
Prunus persica
PRUPE_ppa020417mg
I
0.684
Pm017697
Prunus mume
Pm017697
I
0.684
Eucgr.B01541
Eucalyptus grandis
Eucgr.B01541
I
0.684
Eucgr.E01561
Eucalyptus grandis
Eucgr.E01561
I
0.684
gene08075-v1.0-hybrid
Fragaria vesca
gene08075-v1.0-hybrid
I
0.682
Cucsa.260030
Cucumis sativus
Cucsa.260030
I
0.682
Cla021851
Citrullus lanatus
Cla021851
I
0.682
Ca_06034
Cicer arietinum
Ca_06034
I
0.681
PRUPE_ppa020642mg
Prunus persica
PRUPE_ppa020642mg
I
0.681
mgf026487m
Mimulus guttatus
mgf026487m
I
0.681
Pm020605
Prunus mume
Pm020605
I
0.681
TRAES3BF046300130CFD_g
Triticum aestivum
TRAES3BF046300130CFD_g
I
0.678
Eucgr.E01571
Eucalyptus grandis
Eucgr.E01571
I
0.677
Bo9g001020
Brassica oleracea
Bo9g001020
I
0.677
Ca_02325
Cicer arietinum
Ca_02325
I
0.677
TCM_005704
Theobroma cacao
TCM_005704
I
0.677
MTR_7g081795
Medicago truncatula
MTR_7g081795
I
0.677
Solyc01g090310.2
Solanum lycopersicum
Solyc01g090310.2
I
0.677
PGSC0003DMG400041045
Solanum tuberosum
PGSC0003DMG400041045
I
0.677