Lus10029334.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10029334.g T008868_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.751 0.776
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.751 0.776
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.751 0.776
ERF098
M01618_2.00 		Arabidopsis thaliana
NNGCCGNC
GNCGGCNN		 PBM
Weirauch et al.(2014)
pTH8259 		0.704 0.735
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.696 0.735
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.696 0.735
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.686 0.735
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.686 0.735
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.686 0.735
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.686 0.735
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.686 0.735
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.679 0.714
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.679 0.714
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.679 0.714
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10029334 AP2 73 125

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

250 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10029333.g Linum usitatissimum Lus10029333.g I 0.810
Lus10016225.g Linum usitatissimum Lus10016225.g I 0.800
Lus10029318.g Linum usitatissimum Lus10029318.g I 0.798
Lus10016224.g Linum usitatissimum Lus10016224.g I 0.798
Lus10016210.g Linum usitatissimum Lus10016210.g I 0.797
Lus10016209.g Linum usitatissimum Lus10016209.g I 0.796
GLYMA07G14070 Glycine max GLYMA07G14070 I 0.794
Gorai.008G108500 Gossypium raimondii Gorai.008G108500 I 0.784
Lus10029331.g Linum usitatissimum Lus10029331.g I 0.784
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.784
TCM_005705 Theobroma cacao TCM_005705 I 0.781
Gorai.004G165800 Gossypium raimondii Gorai.004G165800 I 0.781
Lus10016223.g Linum usitatissimum Lus10016223.g I 0.780
Lus10004011.g Linum usitatissimum Lus10004011.g I 0.778
Lus10030261.g Linum usitatissimum Lus10030261.g I 0.778
Lus10016212.g Linum usitatissimum Lus10016212.g I 0.774
Lus10029319.g Linum usitatissimum Lus10029319.g I 0.772
POPTR_0014s04610 Populus trichocarpa POPTR_0014s04610 I 0.767
Lus10016227.g Linum usitatissimum Lus10016227.g I 0.764
Lus10029314.g Linum usitatissimum Lus10029314.g I 0.764
POPTR_0014s04600 Populus trichocarpa POPTR_0014s04600 I 0.763
cassava19881.m1 Manihot esculenta cassava19881.m1 I 0.763
Eucgr.G00392 Eucalyptus grandis Eucgr.G00392 I 0.762
cassava19882.m1 Manihot esculenta cassava19882.m1 I 0.760
Gorai.007G086000 Gossypium raimondii Gorai.007G086000 I 0.760
TCM_005706 Theobroma cacao TCM_005706 I 0.756
30174.m008756 Ricinus communis 30174.m008756 I 0.755
cassava19883.m1 Manihot esculenta cassava19883.m1 I 0.755
Cla021383 Citrullus lanatus Cla021383 I 0.753
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I 0.752
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I 0.752
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.751
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.751
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.751
Bra004873 Brassica rapa Bra004873 I 0.751
Bo4g024140 Brassica oleracea Bo4g024140 I 0.751
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.751
Thhalv10022108m.g Eutrema salsugineum Thhalv10022108m.g I 0.751
ERF13 Arabidopsis thaliana AT2G44840 D 0.751
Bo4g195220 Brassica oleracea Bo4g195220 I 0.751
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.751
Bra037630 Brassica rapa Bra037630 I 0.751
Eucgr.G00388 Eucalyptus grandis Eucgr.G00388 I 0.750
Cucsa.260030 Cucumis sativus Cucsa.260030 I 0.748
Bo7g040810 Brassica oleracea Bo7g040810 I 0.748
Bra014925 Brassica rapa Bra014925 I 0.748
30174.m008755 Ricinus communis 30174.m008755 I 0.746
Pm017696 Prunus mume Pm017696 I 0.746
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I 0.746
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I 0.746
Eucgr.G00393 Eucalyptus grandis Eucgr.G00393 I 0.745
Eucgr.G00394 Eucalyptus grandis Eucgr.G00394 I 0.745
Eucgr.G00396 Eucalyptus grandis Eucgr.G00396 I 0.745
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.744
Eucgr.G00391 Eucalyptus grandis Eucgr.G00391 I 0.743
Eucgr.G00390 Eucalyptus grandis Eucgr.G00390 I 0.743
Pm017699 Prunus mume Pm017699 I 0.742
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.740
Bo1g102220 Brassica oleracea Bo1g102220 I 0.739
Bra023748 Brassica rapa Bra023748 I 0.739
POPTR_0014s04630 Populus trichocarpa POPTR_0014s04630 I 0.738
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.738
TCM_005707 Theobroma cacao TCM_005707 I 0.737
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.737
evm.TU.supercontig_101.15 Carica papaya evm.TU.supercontig_101.15 I 0.737
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I 0.737
GLYMA03G26310 Glycine max GLYMA03G26310 I 0.735
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I 0.734
Bostr.14547s0008 Boechera stricta Bostr.14547s0008 I 0.734
Eucgr.G00943 Eucalyptus grandis Eucgr.G00943 I 0.734
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I 0.731
30174.m008759 Ricinus communis 30174.m008759 I 0.728
GLYMA03G26530 Glycine max GLYMA03G26530 I 0.727
Carubv10005868m.g Capsella rubella Carubv10005868m.g I 0.726
Cagra.4714s0001 Capsella grandiflora Cagra.4714s0001 I 0.726
scaffold_604310.1 Arabidopsis lyrata scaffold_604310.1 I 0.725
Gorai.008G108600 Gossypium raimondii Gorai.008G108600 I 0.723
PGSC0003DMG400017231 Solanum tuberosum PGSC0003DMG400017231 I 0.722
Solyc09g089930.1 Solanum lycopersicum Solyc09g089930.1 I 0.719
Ca_17212 Cicer arietinum Ca_17212 I 0.717
MDP0000122665 Malus domestica MDP0000122665 I 0.717
MDP0000135205 Malus domestica MDP0000135205 I 0.717
gene04916-v1.0-hybrid Fragaria vesca gene04916-v1.0-hybrid I 0.716
GSMUA_Achr5G12530_001 Musa acuminata GSMUA_Achr5G12530_001 I 0.716
PRUPE_ppa023698mg Prunus persica PRUPE_ppa023698mg I 0.716
MDP0000178398 Malus domestica MDP0000178398 I 0.716
Ca_02325 Cicer arietinum Ca_02325 I 0.716
Pm017698 Prunus mume Pm017698 I 0.716
SapurV1A.0124s0180 Salix purpurea SapurV1A.0124s0180 I 0.715
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I 0.715
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I 0.715
Thhalv10029212m.g Eutrema salsugineum Thhalv10029212m.g I 0.715
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I 0.715
Eucgr.E01571 Eucalyptus grandis Eucgr.E01571 I 0.714
Pm017700 Prunus mume Pm017700 I 0.713
Solyc09g066350.1 Solanum lycopersicum Solyc09g066350.1 I 0.712
PGSC0003DMG400010309 Solanum tuberosum PGSC0003DMG400010309 I 0.712
PGSC0003DMG400013402 Solanum tuberosum PGSC0003DMG400013402 I 0.710
PGSC0003DMG400014204 Solanum tuberosum PGSC0003DMG400014204 I 0.710
Solyc03g005520.1 Solanum lycopersicum Solyc03g005520.1 I 0.710
Cucsa.260040 Cucumis sativus Cucsa.260040 I 0.709
Ca_17211 Cicer arietinum Ca_17211 I 0.709
POPTR_0014s04620 Populus trichocarpa POPTR_0014s04620 I 0.708
Lus10013959.g Linum usitatissimum Lus10013959.g I 0.707
Cla021384 Citrullus lanatus Cla021384 I 0.707
Gorai.007G086100 Gossypium raimondii Gorai.007G086100 I 0.707
GLYMA03G26520 Glycine max GLYMA03G26520 I 0.707
Bostr.25993s0288 Boechera stricta Bostr.25993s0288 I 0.707
PGSC0003DMG400026046 Solanum tuberosum PGSC0003DMG400026046 I 0.706
Solyc01g090370.1 Solanum lycopersicum Solyc01g090370.1 I 0.706
Bo9g001020 Brassica oleracea Bo9g001020 I 0.705
MTR_8g006840 Medicago truncatula MTR_8g006840 I 0.705
PRUPE_ppa025748mg Prunus persica PRUPE_ppa025748mg I 0.705
Bostr.19424s0320 Boechera stricta Bostr.19424s0320 I 0.704
Carubv10015406m.g Capsella rubella Carubv10015406m.g I 0.704
ERF098 Arabidopsis thaliana AT3G23230 D 0.704
Cagra.8559s0002 Capsella grandiflora Cagra.8559s0002 I 0.704
VIT_15s0021g01630 Vitis vinifera VIT_15s0021g01630 I 0.703
Gorai.008G108400 Gossypium raimondii Gorai.008G108400 I 0.702
Gorai.004G070600 Gossypium raimondii Gorai.004G070600 I 0.702
Gorai.004G070800 Gossypium raimondii Gorai.004G070800 I 0.700
Gorai.004G070500 Gossypium raimondii Gorai.004G070500 I 0.700
mgf021756m Mimulus guttatus mgf021756m I 0.699
mgf026487m Mimulus guttatus mgf026487m I 0.699
TCM_005704 Theobroma cacao TCM_005704 I 0.698
e_gw1.72.116.1 Physcomitrella patens e_gw1.72.116.1 I 0.696
Aquca_067_00004 Aquilegia coerulea Aquca_067_00004 I 0.696
Thhalv10001003m.g Eutrema salsugineum Thhalv10001003m.g I 0.696
ERF1A Arabidopsis thaliana AT4G17500 D 0.696
Bo8g049470 Brassica oleracea Bo8g049470 I 0.696
Carubv10005497m.g Capsella rubella Carubv10005497m.g I 0.696
e_gw1.53.114.1 Physcomitrella patens e_gw1.53.114.1 I 0.696
ATERF-1 Arabidopsis lyrata fgenesh2_kg.7__2559__AT4G17500.1 I 0.696
Carubv10027108m.g Capsella rubella Carubv10027108m.g I 0.696
Bra021047 Brassica rapa Bra021047 I 0.696
Cagra.3675s0007 Capsella grandiflora Cagra.3675s0007 I 0.696
Bra021048 Brassica rapa Bra021048 I 0.696
Bostr.30275s0207 Boechera stricta Bostr.30275s0207 I 0.696
Cagra.3356s0041 Capsella grandiflora Cagra.3356s0041 I 0.696
Lus10016211.g Linum usitatissimum Lus10016211.g I 0.694
fgenesh2_kg.3__2538__AT3G23230.1 Arabidopsis lyrata fgenesh2_kg.3__2538__AT3G23230.1 I 0.694
fgenesh2_kg.471__1__AT3G23230.1 Arabidopsis lyrata fgenesh2_kg.471__1__AT3G23230.1 I 0.694
Eucgr.E01561 Eucalyptus grandis Eucgr.E01561 I 0.694
Pm017697 Prunus mume Pm017697 I 0.693
PRUPE_ppa020417mg Prunus persica PRUPE_ppa020417mg I 0.693
Cla010886 Citrullus lanatus Cla010886 I 0.693
Bostr.14419s0016 Boechera stricta Bostr.14419s0016 I 0.692
chr3.CM0080.200.nd Lotus japonicus chr3.CM0080.200.nd I 0.692
Eucgr.B01541 Eucalyptus grandis Eucgr.B01541 I 0.692
Bo2g132270 Brassica oleracea Bo2g132270 I 0.691
Bra022115 Brassica rapa Bra022115 I 0.691
Cla021851 Citrullus lanatus Cla021851 I 0.690
Bo1g017590 Brassica oleracea Bo1g017590 I 0.690
Cucsa.129630 Cucumis sativus Cucsa.129630 I 0.689
Cla003706 Citrullus lanatus Cla003706 I 0.689
PGSC0003DMG400040573 Solanum tuberosum PGSC0003DMG400040573 I 0.688
VIT_07s0005g03280 Vitis vinifera VIT_07s0005g03280 I 0.688
GSMUA_Achr11G20930_001 Musa acuminata GSMUA_Achr11G20930_001 I 0.688
Bostr.19424s0319 Boechera stricta Bostr.19424s0319 I 0.688
gene08075-v1.0-hybrid Fragaria vesca gene08075-v1.0-hybrid I 0.687
MTR_8g006825 Medicago truncatula MTR_8g006825 I 0.687
Carubv10014553m.g Capsella rubella Carubv10014553m.g I 0.687
Cagra.8559s0001 Capsella grandiflora Cagra.8559s0001 I 0.687
GLYMA17G15480 Glycine max GLYMA17G15480 I 0.686
GLYMA11G03910 Glycine max GLYMA11G03910 I 0.686
GRMZM2G466044 Zea mays GRMZM2G466044 I 0.686
Lus10004368.g Linum usitatissimum Lus10004368.g I 0.686
gene10841-v1.0-hybrid Fragaria vesca gene10841-v1.0-hybrid I 0.686
Cucsa.321160 Cucumis sativus Cucsa.321160 I 0.686
MTR_4g100380 Medicago truncatula MTR_4g100380 I 0.686
GLYMA05G05180 Glycine max GLYMA05G05180 I 0.686
GSMUA_Achr5G21050_001 Musa acuminata GSMUA_Achr5G21050_001 I 0.686
orange1.1g044938m.g Citrus sinensis orange1.1g044938m.g I 0.686
Bo1g102210 Brassica oleracea Bo1g102210 I 0.686
SapurV1A.1153s0050 Salix purpurea SapurV1A.1153s0050 I 0.686
PK29475.1 Cannabis sativa PK29475.1 I 0.686
ERF1B Arabidopsis thaliana AT3G23240 D 0.686
LjSGA_146586.1 Lotus japonicus LjSGA_146586.1 I 0.686
Pavir.Ab02556 Panicum virgatum Pavir.Ab02556 I 0.686
Pavir.Aa01184 Panicum virgatum Pavir.Aa01184 I 0.686
Bra023745 Brassica rapa Bra023745 I 0.686
Bra023746 Brassica rapa Bra023746 I 0.686
MDP0000299277 Malus domestica MDP0000299277 I 0.686
MDP0000665685 Malus domestica MDP0000665685 I 0.686
MDP0000787281 Malus domestica MDP0000787281 I 0.686
GLYMA01G41520 Glycine max GLYMA01G41520 I 0.686
Gorai.006G214100 Gossypium raimondii Gorai.006G214100 I 0.686
ERF1 Arabidopsis lyrata scaffold_302806.1 I 0.686
Pm020605 Prunus mume Pm020605 I 0.686
POPTR_0001s15390 Populus trichocarpa POPTR_0001s15390 I 0.686
POPTR_0003s07910 Populus trichocarpa POPTR_0003s07910 I 0.686
Sb04g033105 Sorghum bicolor Sb04g033105 I 0.686
PRUPE_ppa009707mg Prunus persica PRUPE_ppa009707mg I 0.686
PRUPE_ppa020642mg Prunus persica PRUPE_ppa020642mg I 0.686
Ciclev10021652m.g Citrus clementina Ciclev10021652m.g I 0.686
Solyc01g090310.2 Solanum lycopersicum Solyc01g090310.2 I 0.686
cassava4871.m1 Manihot esculenta cassava4871.m1 I 0.686
PGSC0003DMG400041045 Solanum tuberosum PGSC0003DMG400041045 I 0.686
mgf021973m Mimulus guttatus mgf021973m I 0.686
28192.m000255 Ricinus communis 28192.m000255 I 0.686
Pm023376 Prunus mume Pm023376 I 0.686
VIT_02s0234g00130 Vitis vinifera VIT_02s0234g00130 I 0.686
TCM_015898 Theobroma cacao TCM_015898 I 0.686
Cla005705 Citrullus lanatus Cla005705 I 0.686
Thhalv10022374m.g Eutrema salsugineum Thhalv10022374m.g I 0.685
chr5.CM0494.320.nc Lotus japonicus chr5.CM0494.320.nc I 0.685
TRAES3BF046300130CFD_g Triticum aestivum TRAES3BF046300130CFD_g I 0.685
BRADI3G50490 Brachypodium distachyon BRADI3G50490 I 0.684
MTR_1g070000 Medicago truncatula MTR_1g070000 I 0.684
MTR_1g070015 Medicago truncatula MTR_1g070015 I 0.684
Bra040159 Brassica rapa Bra040159 I 0.683
MTR_7g081815 Medicago truncatula MTR_7g081815 I 0.683
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.683
orange1.1g030002m.g Citrus sinensis orange1.1g030002m.g I 0.683
MTR_7g081805 Medicago truncatula MTR_7g081805 I 0.683
Ca_06032 Cicer arietinum Ca_06032 I 0.683
MTR_1g070020 Medicago truncatula MTR_1g070020 I 0.683
MTR_1g070045 Medicago truncatula MTR_1g070045 I 0.683
Bo8g115580 Brassica oleracea Bo8g115580 I 0.682
Bra032512 Brassica rapa Bra032512 I 0.682
SapurV1A.0007s0970 Salix purpurea SapurV1A.0007s0970 I 0.682
GLYMA03G26437 Glycine max GLYMA03G26437 I 0.681
PGSC0003DMG400026049 Solanum tuberosum PGSC0003DMG400026049 I 0.680
Gorai.004G195100 Gossypium raimondii Gorai.004G195100 I 0.680
Gorai.004G195000 Gossypium raimondii Gorai.004G195000 I 0.680
Gorai.004G195200 Gossypium raimondii Gorai.004G195200 I 0.680
Ca_12775 Cicer arietinum Ca_12775 I 0.680
Gorai.008G232500 Gossypium raimondii Gorai.008G232500 I 0.680
Pavir.Gb00956 Panicum virgatum Pavir.Gb00956 I 0.679
Pavir.Ga01099 Panicum virgatum Pavir.Ga01099 I 0.679
ERF2 Arabidopsis thaliana AT5G47220 D 0.679
Sb06g024355 Sorghum bicolor Sb06g024355 I 0.679
Lus10004369.g Linum usitatissimum Lus10004369.g I 0.679
GRMZM2G055180 Zea mays GRMZM2G055180 I 0.679
GRMZM2G080516 Zea mays GRMZM2G080516 I 0.679
Lus10040167.g Linum usitatissimum Lus10040167.g I 0.679
Si030692m.g Setaria italica Si030692m.g I 0.679
OMERI03G03710 Oryza meridionalis OMERI03G03710 I 0.678
OMERI04G17100 Oryza meridionalis OMERI04G17100 I 0.677
ONIVA04G18900 Oryza nivara ONIVA04G18900 I 0.677
OPUNC04G18300 Oryza punctata OPUNC04G18300 I 0.677
ORUFI04G22230 Oryza rufipogon ORUFI04G22230 I 0.677
PK23186.1 Cannabis sativa PK23186.1 I 0.677
PGSC0003DMG400007027 Solanum tuberosum PGSC0003DMG400007027 I 0.677
PGSC0003DMG400026260 Solanum tuberosum PGSC0003DMG400026260 I 0.677
ORGLA04G0177100 Oryza glaberrima ORGLA04G0177100 I 0.677
Solyc08g078170.1 Solanum lycopersicum Solyc08g078170.1 I 0.677
BGIOSGA014605 Oryza indica BGIOSGA014605 I 0.677
OGLUM04G20600 Oryza glumaepatula OGLUM04G20600 I 0.677
OS04G0546800 Oryza sativa OS04G0546800 I 0.677