Lus10016223.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10016223.g T008806_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD

HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.763 0.792
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD

HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.763 0.792
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN

NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.763 0.792
ERF098
M01618_2.00
Arabidopsis thaliana
NNGCCGNC

GNCGGCNN
PBM
Weirauch et al.(2014)
pTH8259
0.699 0.750
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.695 0.729
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.695 0.729
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN

NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.677 0.708
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND

HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.677 0.708
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR

YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.677 0.708
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10016223 AP2 68 119

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BRADI4G33740 Brachypodium distachyon BRADI4G33740 N 0.000
MLOC_68986 Hordeum vulgare MLOC_68986 N 0.000
Pavir.J08325 Panicum virgatum Pavir.J08325 N 0.000
Si022106m.g Setaria italica Si022106m.g N 0.000
Traes_5AL_39649C38E Triticum aestivum Traes_5AL_39649C38E N 0.000
Traes_5BL_C08428870 Triticum aestivum Traes_5BL_C08428870 N 0.000
Traes_5DL_1950C1FC2 Triticum aestivum Traes_5DL_1950C1FC2 N 0.000
GRMZM2G000842 Zea mays GRMZM2G000842 N 0.000