Cla022937 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla022937 T006536_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.791 0.940
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.790 0.900
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.790 0.900
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.789 0.880
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.789 0.880
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.788 0.940
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.788 0.940
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.788 0.940
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.788 0.940
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.768 0.920
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.768 0.920
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.765 0.920
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.765 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla022937 AP2 22 73

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.704
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.809
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.807
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.765
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.791
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.789
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.766
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.791
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.790
ERF010 Arabidopsis thaliana AT5G67190 D 0.790
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.765
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.791
ERF011 Arabidopsis thaliana AT3G50260 D 0.789
ERF008 Arabidopsis thaliana AT2G23340 D 0.788
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.768
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.790
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.809
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.791
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.728
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.752
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.791
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.757
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.766
Bo7g118430 Brassica oleracea Bo7g118430 I 0.791
Bo9g020380 Brassica oleracea Bo9g020380 I 0.784
Bo7g063980 Brassica oleracea Bo7g063980 I 0.790
Bo4g151460 Brassica oleracea Bo4g151460 I 0.791
Bo1g004940 Brassica oleracea Bo1g004940 I 0.781
Bo8g079660 Brassica oleracea Bo8g079660 I 0.790
Bra011744 Brassica rapa Bra011744 I 0.756
Bra012140 Brassica rapa Bra012140 I 0.779
Bra014056 Brassica rapa Bra014056 I 0.820
Bra017811 Brassica rapa Bra017811 I 0.791
Bra032173 Brassica rapa Bra032173 I 0.791
Bra036061 Brassica rapa Bra036061 I 0.790
Bra037124 Brassica rapa Bra037124 I 0.784
PK15612.1 Cannabis sativa PK15612.1 I 0.813
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.790
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.789
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.791
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.791
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.809
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.790
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.791
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.789
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.809
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.791
Ca_02170 Cicer arietinum Ca_02170 I 0.772
Ca_01556 Cicer arietinum Ca_01556 I 0.757
Cla014175 Citrullus lanatus Cla014175 I 0.752
Cla020550 Citrullus lanatus Cla020550 I 0.736
Cla020961 Citrullus lanatus Cla020961 I 0.820
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.814
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.798
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.814
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.798
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.826
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.820
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.736
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.752
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.822
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.804
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.804
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.798
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.772
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.791
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.790
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.749
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.799
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.814
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.791
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.756
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.769
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.791
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.770
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.820
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.770
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.822
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.798
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.807
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.820
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.798
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.807
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.758
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.766
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.757
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.809
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.747
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.807
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.753
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.770
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.798
MDP0000125673 Malus domestica MDP0000125673 I 0.799
MDP0000179962 Malus domestica MDP0000179962 I 0.799
MDP0000756341 Malus domestica MDP0000756341 I 0.797
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.809
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.809
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.773
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.803
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.757
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.772
mgf000289m Mimulus guttatus mgf000289m I 0.792
mgf025363m Mimulus guttatus mgf025363m I 0.780
mgf021115m Mimulus guttatus mgf021115m I 0.789
mgf006561m Mimulus guttatus mgf006561m I 0.783
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.793
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.734
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.746
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.769
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.736
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.728
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.786
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.793
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.781
OBART06G04460 Oryza barthii OBART06G04460 I 0.766
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.757
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.766
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.757
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.766
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.757
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.766
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.757
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.757
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.766
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.757
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.766
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.766
OS06G0166400 Oryza sativa OS06G0166400 I 0.766
OS04G0648900 Oryza sativa OS04G0648900 I 0.757
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.757
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.757
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.766
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.766
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.809
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.773
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.773
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.809
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.795
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.801
30170.m013843 Ricinus communis 30170.m013843 I 0.809
28718.m000038 Ricinus communis 28718.m000038 I 0.797
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.758
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.807
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.809
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.773
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.758
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.809
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.792
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.776
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.788
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.792
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.766
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.757
TCM_000669 Theobroma cacao TCM_000669 I 0.798
TCM_033791 Theobroma cacao TCM_033791 I 0.822
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.758
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.759
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.769
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.757
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.734
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.737
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.757