cassava2757.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava2757.m1 T006870_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN

NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.872 0.856
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG

CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.872 0.856
Q6SA75_TOBAC
M09733_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_01
0.868 0.865
Q6SA75_TOBAC
M09734_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_02
0.868 0.865
ANT
M02647_2.00
Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW

WDNRCHTBGGGAWNYGTGYNH
SELEX
Mathelier et al.(2014)
MA0571.1
0.866 0.865
ANT
M09705_2.00
Arabidopsis thaliana
CACRNWTCCCRAKG

CMTYGGGAWNYGTG
Transfac
Matys et al.(2006)
P$ANT_01
0.866 0.865
AIL7
M06688_2.00
Arabidopsis thaliana
CRNWTHYCRAG

CTYGRDAWNYG
Dap-seq
OMalley et al.(2016)
AIL7_col_a
0.819 0.837
AIL7
M06689_2.00
Arabidopsis thaliana
DCRNWTHYCRAG

CTYGRDAWNYGH
Dap-seq
OMalley et al.(2016)
AIL7_colamp_a
0.819 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava2757.m1 AP2 255 312
cassava2757.m1 AP2 354 406

Links

Other AP2 family TFs
Other Manihot esculenta TFs

526 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL008005 Aedes aegypti AAEL008005 N 0.000
AALB004533 Anopheles albimanus AALB004533 N 0.000
AATE016185 Anopheles atroparvus AATE016185 N 0.000
ACHR000725 Anopheles christyi ACHR000725 N 0.000
ACUA010210 Anopheles culicifacies ACUA010210 N 0.000
AFAF018005 Anopheles farauti AFAF018005 N 0.000
AFUN002062 Anopheles funestus AFUN002062 N 0.000
AGAP007377 Anopheles gambiae AGAP007377 N 0.000
AMIN010495 Anopheles minimus AMIN010495 N 0.000
AQUA004502 Anopheles quadriannulatus AQUA004502 N 0.000
ASIS000748 Anopheles sinensis ASIS000748 N 0.000
ASTEI01332 Anopheles stephensi ASTEI01332 N 0.000
LLOJ005404 Lutzomyia longipalpis LLOJ005404 N 0.000
PPAI003792 Phlebotomus papatasi PPAI003792 N 0.000