CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

cassava2757.m1 *(Manihot esculenta)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	cassava2757.m1	T006870_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PLT1 M06622_2.00	Arabidopsis thaliana	DDCACGNWWHYCRAGRHNN	NNDYCTYGRDWWNCGTGHH	Dap-seq OMalley et al.(2016) PLT1_col_a	0.872	0.856
PLT1 M06623_2.00	Arabidopsis thaliana	DYDCRNWTYYCRAG	CTYGRRAWNYGHRH	Dap-seq OMalley et al.(2016) PLT1_colamp_a	0.872	0.856
Q6SA75_TOBAC M09733_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ANTL_01	0.868	0.865
Q6SA75_TOBAC M09734_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ANTL_02	0.868	0.865
ANT M02647_2.00	Arabidopsis thaliana	DNRCACRNWTCCCVADGYNHW	WDNRCHTBGGGAWNYGTGYNH	SELEX Mathelier et al.(2014) MA0571.1	0.866	0.865
ANT M09705_2.00	Arabidopsis thaliana	CACRNWTCCCRAKG	CMTYGGGAWNYGTG	Transfac Matys et al.(2006) P$ANT_01	0.866	0.865
AIL7 M06688_2.00	Arabidopsis thaliana	CRNWTHYCRAG	CTYGRDAWNYG	Dap-seq OMalley et al.(2016) AIL7_col_a	0.819	0.837
AIL7 M06689_2.00	Arabidopsis thaliana	DCRNWTHYCRAG	CTYGRDAWNYGH	Dap-seq OMalley et al.(2016) AIL7_colamp_a	0.819	0.837
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
cassava2757.m1	AP2	255	312	SQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGP
cassava2757.m1	AP2	354	406	SVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGT

Links
Other AP2 family TFs
Other *Manihot esculenta* TFs

526 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL008005	Aedes aegypti	AAEL008005	N	0.000
AALB004533	Anopheles albimanus	AALB004533	N	0.000
AATE016185	Anopheles atroparvus	AATE016185	N	0.000
ACHR000725	Anopheles christyi	ACHR000725	N	0.000
ACUA010210	Anopheles culicifacies	ACUA010210	N	0.000
AFAF018005	Anopheles farauti	AFAF018005	N	0.000
AFUN002062	Anopheles funestus	AFUN002062	N	0.000
AGAP007377	Anopheles gambiae	AGAP007377	N	0.000
AMIN010495	Anopheles minimus	AMIN010495	N	0.000
AQUA004502	Anopheles quadriannulatus	AQUA004502	N	0.000
ASIS000748	Anopheles sinensis	ASIS000748	N	0.000
ASTEI01332	Anopheles stephensi	ASTEI01332	N	0.000
LLOJ005404	Lutzomyia longipalpis	LLOJ005404	N	0.000
PPAI003792	Phlebotomus papatasi	PPAI003792	N	0.000