CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava2757.m1
(
Manihot esculenta
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
cassava2757.m1
T006870_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.872
0.856
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.872
0.856
Q6SA75_TOBAC
M09733_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_01
0.868
0.865
Q6SA75_TOBAC
M09734_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_02
0.868
0.865
ANT
M02647_2.00
Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH
SELEX
Mathelier et al.(2014)
MA0571.1
0.866
0.865
ANT
M09705_2.00
Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG
Transfac
Matys et al.(2006)
P$ANT_01
0.866
0.865
AIL7
M06688_2.00
Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG
Dap-seq
OMalley et al.(2016)
AIL7_col_a
0.819
0.837
AIL7
M06689_2.00
Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH
Dap-seq
OMalley et al.(2016)
AIL7_colamp_a
0.819
0.837
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava2757.m1
AP2
255
312
SQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGP
cassava2757.m1
AP2
354
406
SVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGT
Links
Other
AP2
family TFs
Other
Manihot esculenta
TFs
526 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL008005
Aedes aegypti
AAEL008005
N
0.000
AALB004533
Anopheles albimanus
AALB004533
N
0.000
AATE016185
Anopheles atroparvus
AATE016185
N
0.000
ACHR000725
Anopheles christyi
ACHR000725
N
0.000
ACUA010210
Anopheles culicifacies
ACUA010210
N
0.000
AFAF018005
Anopheles farauti
AFAF018005
N
0.000
AFUN002062
Anopheles funestus
AFUN002062
N
0.000
AGAP007377
Anopheles gambiae
AGAP007377
N
0.000
AMIN010495
Anopheles minimus
AMIN010495
N
0.000
AQUA004502
Anopheles quadriannulatus
AQUA004502
N
0.000
ASIS000748
Anopheles sinensis
ASIS000748
N
0.000
ASTEI01332
Anopheles stephensi
ASTEI01332
N
0.000
LLOJ005404
Lutzomyia longipalpis
LLOJ005404
N
0.000
PPAI003792
Phlebotomus papatasi
PPAI003792
N
0.000