cassava28630.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava28630.m1 T006872_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN

NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.718 0.776
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND

HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.718 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava28630.m1 AP2 1 50

Links

Other AP2 family TFs
Other Manihot esculenta TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACOC_0000768601 Angiostrongylus costaricensis ACOC_0000768601 N 0.000
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.000
A_05510 Schistosoma haematobium A_05510 N 0.000
CapteG158220 Capitella teleta CapteG158220 N 0.000
csin110255 Clonorchis sinensis csin110255 N 0.000
D915_00818 Fasciola hepatica D915_00818 N 0.000
D915_15256 Fasciola hepatica D915_15256 N 0.000
DILT_0000548601 Diphyllobothrium latum DILT_0000548601 N 0.000
DILT_0001497901 Diphyllobothrium latum DILT_0001497901 N 0.000
ECANG7_02036 Echinococcus canadensis ECANG7_02036 N 0.000
ECANG7_05481 Echinococcus canadensis ECANG7_05481 N 0.000
EmuJ_000768300 Echinococcus multilocularis EmuJ_000768300 N 0.000
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.000
fgenesh2_pm.scaffold_24000033 Branchiostoma floridae fgenesh2_pm.scaffold_24000033 N 0.000
Hba_13817 Heterorhabditis bacteriophora Hba_13817 N 0.000
HCOI00860100 Haemonchus contortus HCOI00860100 N 0.000
HDID_0000237901 Hymenolepis diminuta HDID_0000237901 N 0.000
HDID_0000408601 Hymenolepis diminuta HDID_0000408601 N 0.000
HmN_000466000 Hymenolepis microstoma HmN_000466000 N 0.000
HNAJ_0000974401 Hymenolepis nana HNAJ_0000974401 N 0.000
HNAJ_0001249801 Hymenolepis nana HNAJ_0001249801 N 0.000
ISCW017350 Ixodes scapularis ISCW017350 N 0.000
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.000
MCOS_0000726501 Mesocestoides corti MCOS_0000726501 N 0.000
NBR_0000911001 Nippostrongylus brasiliensis NBR_0000911001 N 0.000
NECAME_09126 Necator americanus NECAME_09126 N 0.000
PXEA_0000566701 Protopolystoma xenopodis PXEA_0000566701 N 0.000
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.000
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.000
SCUD_0000020101 Schistosoma curassoni SCUD_0000020101 N 0.000
SCUD_0000067701 Schistosoma curassoni SCUD_0000067701 N 0.000
Sjc_0031360 Schistosoma japonicum Sjc_0031360 N 0.000
SMAR013695 Strigamia maritima SMAR013695 N 0.000
Smp_000980 Schistosoma mansoni Smp_000980 N 0.000
Smp_103530 Schistosoma mansoni Smp_103530 N 0.000
SMRZ_0000146101 Schistosoma margrebowiei SMRZ_0000146101 N 0.000
SMRZ_0001808901 Schistosoma margrebowiei SMRZ_0001808901 N 0.000
SMTD_0001194601 Schistosoma mattheei SMTD_0001194601 N 0.000
SMU15016767 Schmidtea mediterranea SMU15016767 N 0.000
SMU15030256 Schmidtea mediterranea SMU15030256 N 0.000
SPU_005572 Strongylocentrotus purpuratus SPU_005572 N 0.000
SROB_0000153901 Schistosoma rodhaini SROB_0000153901 N 0.000
SROB_0001061001 Schistosoma rodhaini SROB_0001061001 N 0.000
SSLN_0000493501 Schistocephalus solidus SSLN_0000493501 N 0.000
T265_12733 Opisthorchis viverrini T265_12733 N 0.000
T265_14643 Opisthorchis viverrini T265_14643 N 0.000
TELCIR_07111 Teladorsagia circumcincta TELCIR_07111 N 0.000
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.000
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.000
TRE_0000506801 Trichobilharzia regenti TRE_0000506801 N 0.000
TsM_000088100 Taenia solium TsM_000088100 N 0.000
TsM_000115400 Taenia solium TsM_000115400 N 0.000
TTAC_0000194001 Hydatigera taeniaeformis TTAC_0000194001 N 0.000
TTAC_0000225801 Hydatigera taeniaeformis TTAC_0000225801 N 0.000