Cucsa.395960 (Cucumis sativus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cucsa.395960 T007120_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.791 0.940
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.790 0.900
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.790 0.900
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.789 0.880
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.789 0.880
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.788 0.940
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.788 0.940
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.788 0.940
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.788 0.940
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.768 0.920
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.768 0.920
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.765 0.920
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.765 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.395960.1 AP2 21 72

Links

Other AP2 family TFs
Other Cucumis sativus TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK15172.1 Cannabis sativa PK15172.1 D 0.000
OS02G0104500 Oryza sativa OS02G0104500 D 0.000
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.000
SELMODRAFT_14382 Selaginella moellendorffii SELMODRAFT_14382 I 0.000
SELMODRAFT_24518 Selaginella moellendorffii SELMODRAFT_24518 I 0.000
TCM_037381 Theobroma cacao TCM_037381 I 0.000
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.000
29739.m003611 Ricinus communis 29739.m003611 I 0.000
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.000
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.000
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.000
Gorai.001G020300 Gossypium raimondii Gorai.001G020300 I 0.000
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.000
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.000
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.000
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.000
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.000
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.000
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.000
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.000
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.000
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.000
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.000
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.000
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.000
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.000
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.000
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.000
OB02G10400 Oryza brachyantha OB02G10400 I 0.000
OBART02G00380 Oryza barthii OBART02G00380 I 0.000
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.000
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.000
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.000
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.000
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.000
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.000
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.000
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.000